Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1a24r
         (509 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    31   0.37 
U97593-6|AAB52879.2|  925|Caenorhabditis elegans Prion-like-(q/n...    29   1.5  
U97593-5|AAB52880.1| 1175|Caenorhabditis elegans Prion-like-(q/n...    29   1.5  
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    29   2.0  

>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 31.5 bits (68), Expect = 0.37
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
 Frame = -3

Query: 189 FCAGLVRAGGRDYDNTDLGAPAXFQN-----ALVGIVSFGKSNANDIYPVVLTSISSFTE 25
           FCAG +  GG D    D G P   +       L G++S+G   A    P + T ++ +  
Sbjct: 196 FCAGYLE-GGIDSCQGDSGGPFACRREDGAFVLAGVISWGDGCAQKKQPGIYTMVAPYLS 254

Query: 24  WI 19
           WI
Sbjct: 255 WI 256


>U97593-6|AAB52879.2|  925|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
           isoform c protein.
          Length = 925

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +3

Query: 126 QGHPSQYCRSRGHQPGPNRRRICYQSRRDHDPCTV 230
           +GH       RGH P P R R  Y +   HDPC V
Sbjct: 221 KGHVPGDANYRGHGPDPPRLRPKY-TADSHDPCNV 254


>U97593-5|AAB52880.1| 1175|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
           isoform a protein.
          Length = 1175

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +3

Query: 126 QGHPSQYCRSRGHQPGPNRRRICYQSRRDHDPCTV 230
           +GH       RGH P P R R  Y +   HDPC V
Sbjct: 340 KGHVPGDANYRGHGPDPPRLRPKY-TADSHDPCNV 373


>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
            lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 409  CHPXRPKHPAGCYYPTRCXNTPGY 338
            C P   K P  C+   RC +TPGY
Sbjct: 1874 CSPICQKQPNWCHNGGRCLDTPGY 1897


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,072,786
Number of Sequences: 27780
Number of extensions: 218532
Number of successful extensions: 535
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)