Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV1a22r
(811 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 121 1e-28
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 97 2e-21
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 97 3e-21
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 88 2e-18
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 82 8e-17
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 71 2e-13
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 71 2e-13
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 71 3e-13
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 70 5e-13
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 67 2e-12
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 67 2e-12
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 66 7e-12
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 64 3e-11
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 63 4e-11
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 63 4e-11
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 63 5e-11
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 62 9e-11
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 62 1e-10
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 58 2e-09
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 57 3e-09
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 56 5e-09
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 54 3e-08
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 52 1e-07
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 47 3e-06
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 44 3e-05
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 44 3e-05
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 43 6e-05
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 39 7e-04
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 35 0.012
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 30 0.34
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 30 0.34
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 30 0.45
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 29 0.78
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 28 1.4
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz... 27 2.4
SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pomb... 27 3.2
SPAC1B3.07c |vps28||ESCRT I complex subunit Vps28|Schizosaccharo... 26 7.3
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 26 7.3
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||... 26 7.3
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz... 26 7.3
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce... 26 7.3
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch... 26 7.3
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo... 25 9.6
SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces... 25 9.6
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 121 bits (291), Expect = 1e-28
Identities = 51/88 (57%), Positives = 73/88 (82%)
Frame = -3
Query: 752 RKGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTP 573
R G++ I+VATDVA+RG+DV GI +V N+D+P ++EDY+HRIGRTGR+ +KGT+Y +FT
Sbjct: 416 RTGKSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTS 475
Query: 572 SNSRQAKDLVSVLQEANQIISPQLQSMA 489
N++QA++LVS+L EA Q I P+L+ MA
Sbjct: 476 DNAKQARELVSILSEAKQDIDPKLEEMA 503
Score = 28.3 bits (60), Expect = 1.4
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -2
Query: 804 MHGDKTQQERDEVLYQFK 751
+HGDK Q ERD VL +F+
Sbjct: 399 IHGDKAQDERDWVLNEFR 416
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 97.5 bits (232), Expect = 2e-21
Identities = 46/88 (52%), Positives = 62/88 (70%)
Frame = -3
Query: 752 RKGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTP 573
R GR SI+VAT VA+RGLD+ + +VIN+D P +DY+HRIGRTGR+ + G + AFF
Sbjct: 477 RSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGQAVAFFNR 536
Query: 572 SNSRQAKDLVSVLQEANQIISPQLQSMA 489
+N AK+L+ +LQEANQ L +MA
Sbjct: 537 NNKGIAKELIELLQEANQECPSFLIAMA 564
Score = 25.8 bits (54), Expect = 7.3
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -2
Query: 804 MHGDKTQQERDEVLYQFK 751
+HGD+TQ+ER+ L F+
Sbjct: 460 IHGDRTQRERERALELFR 477
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 96.7 bits (230), Expect = 3e-21
Identities = 43/80 (53%), Positives = 60/80 (75%)
Frame = -3
Query: 752 RKGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTP 573
+ G+ +LVATDVAARGLD+ ++ VIN +P + EDY+HRIGRTGR+ +KGT+ FFTP
Sbjct: 463 KSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIEDYVHRIGRTGRANTKGTAITFFTP 522
Query: 572 SNSRQAKDLVSVLQEANQII 513
+ A +LV+VL++A Q I
Sbjct: 523 QDKSHAGELVNVLRQAKQDI 542
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 87.8 bits (208), Expect = 2e-18
Identities = 37/90 (41%), Positives = 57/90 (63%)
Frame = -3
Query: 752 RKGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTP 573
+ G +L+AT V ARGLDV ++ V+N+D PN EDY+HR+GRTGR+ G + F TP
Sbjct: 715 KAGVFDVLIATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFITP 774
Query: 572 SNSRQAKDLVSVLQEANQIISPQLQSMADR 483
+ A D+ L+ + Q + +LQ++A +
Sbjct: 775 EQEKYAVDIAKALKMSKQPVPKELQTLASQ 804
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 82.2 bits (194), Expect = 8e-17
Identities = 36/76 (47%), Positives = 50/76 (65%)
Frame = -3
Query: 752 RKGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTP 573
RKG +L+ATD+ ARG+D G+K VINFD+P S YIHRIGRTGR+ + G + FFT
Sbjct: 335 RKGEIWVLIATDLLARGIDFHGVKMVINFDFPQSVHSYIHRIGRTGRAGNTGQAVTFFTK 394
Query: 572 SNSRQAKDLVSVLQEA 525
+ K + V++ +
Sbjct: 395 EDGEYIKLIAGVMRSS 410
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 70.9 bits (166), Expect = 2e-13
Identities = 33/76 (43%), Positives = 46/76 (60%)
Frame = -3
Query: 752 RKGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTP 573
R A ILVATD+A RG+D+ + V+N++ S EDY HRIGRTGR+ GT+ F P
Sbjct: 563 RNKTADILVATDIAGRGIDIPNVSLVLNYNMAKSIEDYTHRIGRTGRAGKSGTAITFLGP 622
Query: 572 SNSRQAKDLVSVLQEA 525
++ DL +L +
Sbjct: 623 EDTDVYYDLRVLLSRS 638
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 70.9 bits (166), Expect = 2e-13
Identities = 31/69 (44%), Positives = 46/69 (66%)
Frame = -3
Query: 752 RKGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTP 573
R+G + +L+ TD+ ARG+DV + VIN+D P + E+YIHRIGR+GR KG + F T
Sbjct: 307 RQGNSRVLICTDIWARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKGVAINFVTN 366
Query: 572 SNSRQAKDL 546
+ R +D+
Sbjct: 367 EDVRILRDI 375
Score = 25.8 bits (54), Expect = 7.3
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -2
Query: 804 MHGDKTQQERDEVLYQFKE 748
MHG+ Q+ERD ++ F++
Sbjct: 290 MHGEMPQKERDAIMQDFRQ 308
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 70.5 bits (165), Expect = 3e-13
Identities = 32/59 (54%), Positives = 40/59 (67%)
Frame = -3
Query: 752 RKGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFT 576
R A ILVATDVA+RGLD+ ++ VINFD P +DYIHR+GRT R+ G S + T
Sbjct: 305 RAEAAKILVATDVASRGLDIPSVQLVINFDLPRDPDDYIHRVGRTARAGRSGESISIVT 363
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 69.7 bits (163), Expect = 5e-13
Identities = 32/69 (46%), Positives = 44/69 (63%)
Frame = -3
Query: 752 RKGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTP 573
R G + IL+ TD+ ARG+DV + VIN+D P + E+YIHRIGR GR KG S F T
Sbjct: 305 RTGSSRILITTDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVSINFVTN 364
Query: 572 SNSRQAKDL 546
+ R +++
Sbjct: 365 DDVRMMREI 373
Score = 25.8 bits (54), Expect = 7.3
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = -2
Query: 804 MHGDKTQQERDEVLYQFK 751
MHGD Q +RD ++++F+
Sbjct: 288 MHGDMDQAQRDTLMHEFR 305
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 67.3 bits (157), Expect = 2e-12
Identities = 32/59 (54%), Positives = 39/59 (66%)
Frame = -3
Query: 752 RKGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFT 576
+ G S LVATDVAARGLD+ + VIN+D P S+ YIHR+GRT R+ G S A T
Sbjct: 332 KSGARSTLVATDVAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARAGRAGKSIALVT 390
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 67.3 bits (157), Expect = 2e-12
Identities = 35/84 (41%), Positives = 48/84 (57%)
Frame = -3
Query: 758 SSRKGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFF 579
SS + IL+ TDVAARGLD+ + V+ +D P S++DY+HRIGRT R+ G + F
Sbjct: 491 SSEDSGSHILLCTDVAARGLDLPNVDLVVQYDAPFSTDDYLHRIGRTARAGHNGAAIMFL 550
Query: 578 TPSNSRQAKDLVSVLQEANQIISP 507
P S L S + AN + P
Sbjct: 551 LPKESEYINLLKSSV-SANILEQP 573
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 65.7 bits (153), Expect = 7e-12
Identities = 29/71 (40%), Positives = 42/71 (59%)
Frame = -3
Query: 734 ILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQA 555
I VATDV RG+D++ + VIN+D P+S + Y+HR+GR GR +KG + F + Q
Sbjct: 348 ICVATDVFGRGIDIERVNIVINYDMPDSPDSYLHRVGRAGRFGTKGLAITFSSSEEDSQI 407
Query: 554 KDLVSVLQEAN 522
D + E N
Sbjct: 408 LDKIQERFEVN 418
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 63.7 bits (148), Expect = 3e-11
Identities = 31/68 (45%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Frame = -3
Query: 770 KFCISSRKGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGR-SKSKGT 594
+FC ++ KG IL+ T+VAARGLD+ + +++ +D P+ DYIHR+GRT R +K G
Sbjct: 381 EFC-NAEKG---ILLCTNVAARGLDIPAVDWIVQYDPPDDPRDYIHRVGRTARGTKGTGK 436
Query: 593 SYAFFTPS 570
S F PS
Sbjct: 437 SLMFLAPS 444
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 63.3 bits (147), Expect = 4e-11
Identities = 29/57 (50%), Positives = 39/57 (68%)
Frame = -3
Query: 758 SSRKGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSY 588
S RK ++ IL ATDV ARG+D I V+ P++++DYIHRIGRTGR+ G +Y
Sbjct: 338 SFRKCQSGILFATDVVARGMDFPNITQVVQITGPSNTDDYIHRIGRTGRAGKTGEAY 394
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 63.3 bits (147), Expect = 4e-11
Identities = 30/89 (33%), Positives = 52/89 (58%)
Frame = -3
Query: 752 RKGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTP 573
R G+ ++LV TDVA+RG+D+ + VIN+D+P + ++HR+GRT R+ G +Y+
Sbjct: 393 RLGKTNLLVVTDVASRGIDIPLLANVINYDFPPQPKVFVHRVGRTARAGRTGWAYSLVRA 452
Query: 572 SNSRQAKDLVSVLQEANQIISPQLQSMAD 486
++ DL L S Q+++ +D
Sbjct: 453 EDAGYLLDLQLFLNRPLVTSSKQVKTDSD 481
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 62.9 bits (146), Expect = 5e-11
Identities = 26/52 (50%), Positives = 39/52 (75%)
Frame = -3
Query: 752 RKGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 597
R G+ + L+ATDVA+RG+D+ GI+ VIN++ P + E Y+HR+GRT R+ G
Sbjct: 551 RDGKCNYLLATDVASRGIDIKGIEVVINYEAPATHEVYLHRVGRTARAGRSG 602
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 62.1 bits (144), Expect = 9e-11
Identities = 25/59 (42%), Positives = 39/59 (66%)
Frame = -3
Query: 752 RKGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFT 576
R G LV +D+ RG+D+ + VINFD+P ++E Y+HRIGR+GR +G + +F +
Sbjct: 328 RNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHRGLAISFIS 386
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 61.7 bits (143), Expect = 1e-10
Identities = 28/79 (35%), Positives = 44/79 (55%)
Frame = -3
Query: 782 KKEMKFCISSRKGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKS 603
KK ++ + +LV TDVAARG+D+ + +VI++ P++++ Y+HR GRT R+
Sbjct: 426 KKRLQSLEKFKNNPKGVLVCTDVAARGIDIPSVTHVIHYHVPHTADMYVHRSGRTARANE 485
Query: 602 KGTSYAFFTPSNSRQAKDL 546
G S P Q K L
Sbjct: 486 DGVSILMCGPKELSQLKRL 504
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 57.6 bits (133), Expect = 2e-09
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Frame = -3
Query: 788 LNKKEMKFCISS-RKGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGR 612
L++ E K IS G ++LV +D+ ARG+DV + VIN+D P S Y+HRIGRT R
Sbjct: 471 LSRDERKKIISRFATGDLNLLVCSDLMARGIDVANTQNVINYDPPLSVRSYVHRIGRTAR 530
Query: 611 SKSKGTSYAFFTPSNSRQAKDLVSVLQ 531
+ +G ++ LV L+
Sbjct: 531 AGREGFAWTLVQSHEGHHFSKLVKQLR 557
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 57.2 bits (132), Expect = 3e-09
Identities = 23/48 (47%), Positives = 34/48 (70%)
Frame = -3
Query: 710 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSN 567
ARGLD + + V+NFD P++++ YIHRIGRT R+ GT+ +F P +
Sbjct: 387 ARGLDFENVACVLNFDMPSNTKSYIHRIGRTARAGKPGTAMSFVVPKS 434
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 56.4 bits (130), Expect = 5e-09
Identities = 27/68 (39%), Positives = 34/68 (50%)
Frame = -3
Query: 743 RASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNS 564
R +L TD+ ARGLD + +VI D P + YIHR+GRT R G + PS
Sbjct: 335 RHVVLFCTDIVARGLDFPAVDWVIQLDAPEDVDTYIHRVGRTARYNRSGNALLLLLPSEE 394
Query: 563 RQAKDLVS 540
K L S
Sbjct: 395 AFLKRLES 402
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 53.6 bits (123), Expect = 3e-08
Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 7/82 (8%)
Frame = -3
Query: 806 ACMAIKLNKKEMKFCISS-RKGRASILVATDVAARGLDVDGIKYVINFDYP------NSS 648
AC+ L + + S R G + +LV T+V ARG+DV + V+N+D P
Sbjct: 380 ACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDP 439
Query: 647 EDYIHRIGRTGRSKSKGTSYAF 582
+ Y+HRIGRTGR G S F
Sbjct: 440 QTYLHRIGRTGRFGRVGVSINF 461
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 51.6 bits (118), Expect = 1e-07
Identities = 20/72 (27%), Positives = 38/72 (52%)
Frame = -3
Query: 752 RKGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTP 573
+ + ++L TD+A+RGLD+ + +V+ D P + + HR GR GR+ G +
Sbjct: 306 KSNKKTVLFTTDIASRGLDIPNVDFVLQLDPPLDPKSFSHRCGRAGRAGRAGVAIVLLND 365
Query: 572 SNSRQAKDLVSV 537
+ ++L+ V
Sbjct: 366 GREEEYEELLRV 377
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 47.2 bits (107), Expect = 3e-06
Identities = 35/112 (31%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
Frame = -3
Query: 806 ACMAIKLNKKEMKFCISSRKGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRI 627
A M+ KL + +K +KG + L+AT + GLD+ + +I +D S + R+
Sbjct: 474 AGMSQKLQNETVK---QFQKGEVNTLIATSIGEEGLDIGEVDMIICYDASASPIRMLQRM 530
Query: 626 GRTGRSKSKGTSYAFFTPSNS----RQAKDLVSVLQEANQIISPQLQSMADR 483
GRTGR K KG Y T +AKD LQ+ I+S + S++++
Sbjct: 531 GRTGR-KRKGYIYMLLTRGKEEAKWERAKDAYRTLQD--NIVSGRGLSLSEK 579
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 44.0 bits (99), Expect = 3e-05
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Frame = -3
Query: 782 KKEMKF-CISSRKGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSK 606
+++M F + G+ I++AT G++ G++ V+++ P SS DY+ GR GR
Sbjct: 1457 ERQMNFDAFRNANGKTRIMIATKAFGLGINYMGVRLVVHYGLPASSMDYVQETGRAGRDG 1516
Query: 605 SKGTSYAFFTPSNS 564
+ F+ +S
Sbjct: 1517 KYAIAALFYEKYDS 1530
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 44.0 bits (99), Expect = 3e-05
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Frame = -3
Query: 782 KKEMKF-CISSRKGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSK 606
+++M F + G+ I++AT G++ G++ V+++ P SS DY+ GR GR
Sbjct: 1457 ERQMNFDAFRNANGKTRIMIATKAFGLGINYMGVRLVVHYGLPASSMDYVQETGRAGRDG 1516
Query: 605 SKGTSYAFFTPSNS 564
+ F+ +S
Sbjct: 1517 KYAIAALFYEKYDS 1530
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 42.7 bits (96), Expect = 6e-05
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = -3
Query: 788 LNKKEMKFCISS-RKGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGR 612
+N+ + K I R G + LVAT + GLD+ +I +D +S I R+GRTGR
Sbjct: 515 MNQMQQKETIDQFRAGVINTLVATSIGEEGLDIGDTDMIICYDASSSPIRTIQRMGRTGR 574
Query: 611 SKS 603
KS
Sbjct: 575 KKS 577
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 39.1 bits (87), Expect = 7e-04
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = -3
Query: 752 RKGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFT 576
+ G I+VAT G+D +++VI+ +P S E Y GR GR F++
Sbjct: 790 QSGSYKIIVATIAFGMGVDKGDVRFVIHHSFPKSLEGYYQETGRAGRDGKPAHCIMFYS 848
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 35.1 bits (77), Expect = 0.012
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = -3
Query: 752 RKGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSK 600
+ G+ ++L+AT VA G+DV VI F+ + Y+ GR SK
Sbjct: 420 KTGKYNVLIATAVAEEGIDVPSCNLVIRFNICRTVTQYVQSRGRARAMASK 470
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 30.3 bits (65), Expect = 0.34
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -3
Query: 776 EMKFCISSRKGRASILVATDVAARGLDVDGIKYVINFDY 660
+ K S+ G ++VAT++A L V GI YV++ Y
Sbjct: 747 QAKIFDSAEPGVRKVVVATNIAETSLTVHGISYVVDTGY 785
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 30.3 bits (65), Expect = 0.34
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = -3
Query: 659 PNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQEANQIISP 507
P SS+ + I K + F PSNS KDL +V ++ N++ SP
Sbjct: 246 PLSSQQILPAISNNTSEKPDSNNCGFLLPSNSTSIKDLKNV-KKGNRLNSP 295
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 29.9 bits (64), Expect = 0.45
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -3
Query: 746 GRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGR 612
G+ ++AT+ G+D+ + VI +P S + + GR GR
Sbjct: 609 GKLYGIIATNALELGIDIGSLDAVITIGFPYSLSNLRQQFGRAGR 653
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 29.1 bits (62), Expect = 0.78
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -3
Query: 776 EMKFCISSRKGRASILVATDVAARGLDVDGIKYVIN 669
+MK SS +G +VAT+VA + + I+YV++
Sbjct: 716 QMKVFDSSPEGHRMCIVATNVAETSITIPNIRYVVD 751
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 28.3 bits (60), Expect = 1.4
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -3
Query: 746 GRASILVATDVAARGLDVDGIKYVIN 669
G +++AT++A L +DGI YV++
Sbjct: 777 GGRKVVIATNIAETSLTIDGIYYVVD 802
>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 440
Score = 27.5 bits (58), Expect = 2.4
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 279 HNIYLYYEDSPS*KCQQKSYLIVVKSFVTTAPPLATLA 392
H+IY+ S C + YL ++ + V TA PL+ +A
Sbjct: 330 HDIYIAGISSVHNVCPKGYYLAIISTIVETANPLSEIA 367
>SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 461
Score = 27.1 bits (57), Expect = 3.2
Identities = 11/39 (28%), Positives = 24/39 (61%)
Frame = -1
Query: 604 QKEHHMLSLPLQIPVKPKIWYLFYKKLIRLLAHNCSRWP 488
+KE ++S+P + +KPK Y+KL++++ + +P
Sbjct: 379 EKEKELISVPSKSDIKPK----HYRKLLKIIEKRINMYP 413
>SPAC1B3.07c |vps28||ESCRT I complex subunit
Vps28|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 25.8 bits (54), Expect = 7.3
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = +1
Query: 688 PSTSSPRAATSVATRILARPFLELIQNFISFL----LSFIA 798
P T +P A S + +A+ L+QNFI+ L L+FIA
Sbjct: 137 PQTVNPTKAPSNPSASIAKSIAGLVQNFITTLDAIRLNFIA 177
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 25.8 bits (54), Expect = 7.3
Identities = 8/22 (36%), Positives = 17/22 (77%)
Frame = -3
Query: 734 ILVATDVAARGLDVDGIKYVIN 669
++++T++A L +DGI YV++
Sbjct: 354 VVISTNIAETSLTIDGIVYVVD 375
>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 565
Score = 25.8 bits (54), Expect = 7.3
Identities = 15/54 (27%), Positives = 21/54 (38%)
Frame = -3
Query: 734 ILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTP 573
+ VA RGL + I ++ + S Y H GR G G + F P
Sbjct: 474 VFVANPSEIRGLHLPSITHIFHLWSTFSGVAYQHIAGRLGAMGQTGKIFNFIIP 527
>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 255
Score = 25.8 bits (54), Expect = 7.3
Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = -3
Query: 692 DGIKYVINFDYPNSS--EDYIHRIGRTGRSKSKGTSYAFFTPSNSRQ 558
DG K+V++ DYP+ + ++ H + + SK ++ + SN ++
Sbjct: 97 DGAKFVVSTDYPDPALIDNLEHNVKQYAEIASKISAVGYLWGSNIKE 143
>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 25.8 bits (54), Expect = 7.3
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = -3
Query: 698 DVDGIKYVINFDYPNSSEDYIHRIGRTGRSKS---KGTSYAFFTPSNSRQAKDLVSVLQE 528
++D I+ + F+ N +D I G+ K KG + A PSN+ ++ + +
Sbjct: 203 ELDDIETIKLFEELNEMKDEIDAHIEGGKCKEVLRKGINVAILGPSNAGKSSLINLLANR 262
Query: 527 ANQIISPQLQSMAD 486
I+SPQ + D
Sbjct: 263 RISIVSPQSGTTRD 276
>SPCC4F11.04c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 345
Score = 25.8 bits (54), Expect = 7.3
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -2
Query: 642 LHPSY-WENWTFKIKRNIICFLYPFKFP 562
LHP Y + WT ++ RN I YP+ P
Sbjct: 109 LHPDYEYILWTDEMSRNFIADNYPWFLP 136
>SPBC4.03c |||COPII-coated vesicle component Sfb3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 25.4 bits (53), Expect = 9.6
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +1
Query: 667 KFITYLIPSTSSPRAATSVATRILARPFLEL 759
+F +Y IP+T+ A+ + ++ +PF EL
Sbjct: 166 QFTSYAIPATNDVCNASGIPLGMIVQPFAEL 196
>SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 350
Score = 25.4 bits (53), Expect = 9.6
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = -3
Query: 701 LDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTS 591
L +D + I YP S EDY + R SK S
Sbjct: 146 LIIDNLSMPIQLAYPTSPEDYAYLRLRRNTSKKSSLS 182
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,051,820
Number of Sequences: 5004
Number of extensions: 61337
Number of successful extensions: 189
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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