Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1a22r
         (811 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       89   4e-20
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.63 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.63 

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 89.0 bits (211), Expect = 4e-20
 Identities = 41/94 (43%), Positives = 62/94 (65%), Gaps = 1/94 (1%)
 Frame = -3

Query: 791 KLNKKEMKFCISSRKGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGR 612
           +L ++  +     + GR SILVAT VAARGLD+  + +VIN+D P   ++Y+HRIGRTGR
Sbjct: 485 RLQRQREEALADFKSGRMSILVATAVAARGLDIKNVSHVINYDLPKGIDEYVHRIGRTGR 544

Query: 611 SKSKGTSYAFFTPSNSRQAK-DLVSVLQEANQII 513
             ++G + +FF P      + DLV +L++ANQ +
Sbjct: 545 VGNRGRATSFFDPEEDAPLRGDLVRILKQANQSV 578



 Score = 26.2 bits (55), Expect = 0.36
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -2

Query: 804 MHGDKTQQERDEVLYQFK 751
           +HGD+ Q++R+E L  FK
Sbjct: 481 IHGDRLQRQREEALADFK 498


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.4 bits (53), Expect = 0.63
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +2

Query: 605 ILNVQFSQYDGCNPPTNLDNQNLLHI 682
           + NV+ + + G  PP  L+N  ++H+
Sbjct: 224 VANVRIADHRGVMPPVILENSGVVHV 249


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.4 bits (53), Expect = 0.63
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +2

Query: 605 ILNVQFSQYDGCNPPTNLDNQNLLHI 682
           + NV+ + + G  PP  L+N  ++H+
Sbjct: 224 VANVRIADHRGVMPPVILENSGVVHV 249


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,261
Number of Sequences: 438
Number of extensions: 4075
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)