Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1a20f
         (587 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0234 - 1743784-1744017,1748103-1749068                           28   6.3  
08_02_0324 - 15766862-15766871,15767041-15767741                       27   8.4  

>05_01_0234 - 1743784-1744017,1748103-1749068
          Length = 399

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -3

Query: 198 LTTKLRKSLSLEVILPILKALALSVDLGSATSL 100
           L  +LRKSL + +I P L+  ALSV+  +A  L
Sbjct: 225 LDVRLRKSLEIRLIPPELEVPALSVEEATAVLL 257


>08_02_0324 - 15766862-15766871,15767041-15767741
          Length = 236

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 19/57 (33%), Positives = 28/57 (49%)
 Frame = +2

Query: 65  LFVLTAIVAVSTNEVADPRSTDRANALSIGSITSSDRLLRSFVVSRAATINWRVLNV 235
           ++VL    +V T      R TD    + I      DR  RSF++S AAT +  +LN+
Sbjct: 45  VYVLERHNSVWTRYETTSRCTDLTAKIIISGFVVLDR--RSFMISDAATFDCLLLNI 99


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,752,307
Number of Sequences: 37544
Number of extensions: 211382
Number of successful extensions: 432
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)