Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1a17r
         (607 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz...   214   7e-57
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha...   214   1e-56
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos...   205   3e-54
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    29   0.70 
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    27   2.1  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    26   4.9  
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa...    25   6.5  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    25   8.6  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     25   8.6  

>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score =  214 bits (523), Expect = 7e-57
 Identities = 103/184 (55%), Positives = 128/184 (69%)
 Frame = -2

Query: 567 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRXEQINISGNFFRNKLKLMSFLRKRCNV 388
           K +VID +GHLLGRLA+V+AK LL G KVVVVR E++NISG+FFRNKLK +++LRK C  
Sbjct: 6   KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65

Query: 387 NPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 208
           NP+RG FHFRAPS+I  K VRGM+PHKT RG+ AL  L+  +G PPPFD           
Sbjct: 66  NPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAAL 125

Query: 207 XVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKXLKRITKDAGEK 28
            V  LKPGR YC VGRLS E+GWKY D+V KLE++RK K+     Y+  L +  K A  K
Sbjct: 126 RVLRLKPGRKYCTVGRLSSEVGWKYSDIVSKLEERRKVKSA--AFYQAKLAKQKKIASAK 183

Query: 27  VSKA 16
            + +
Sbjct: 184 AASS 187


>SPBC839.13c |rpl1601||60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score =  214 bits (522), Expect = 1e-56
 Identities = 103/180 (57%), Positives = 126/180 (70%)
 Frame = -2

Query: 567 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRXEQINISGNFFRNKLKLMSFLRKRCNV 388
           K +VID +GHLLGRLA+V+AK LL G KVVVVR E++NISG+FFRNKLK +++LRK C  
Sbjct: 6   KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65

Query: 387 NPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 208
           NP+RG FHFRAPS+I  K VRGM+PHKT RG+ AL  L+  +G PPPFD           
Sbjct: 66  NPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAAL 125

Query: 207 XVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKXLKRITKDAGEK 28
            V  LKPGR YC VGRLS E+GWKY D+V KLE++RK K+     Y+  L +  K A  K
Sbjct: 126 RVLRLKPGRKYCTVGRLSSEVGWKYNDIVAKLEERRKVKSA--AFYQAKLAKQKKIASAK 183


>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score =  205 bits (501), Expect = 3e-54
 Identities = 92/160 (57%), Positives = 118/160 (73%)
 Frame = -2

Query: 567 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRXEQINISGNFFRNKLKLMSFLRKRCNV 388
           K ++ID +GHL+GRLA+ +AK LL G KVVVVR E++NISG+FFRNKLK +++LRK C  
Sbjct: 6   KLVIIDAKGHLMGRLASTVAKQLLAGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65

Query: 387 NPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 208
           NP+RG FHFRAPS+I  K VRGM+PHKT RG  AL+ L+  +G PPPFD           
Sbjct: 66  NPSRGAFHFRAPSRIFTKAVRGMLPHKTTRGNIALKNLQALEGIPPPFDKQKRLVVPAAL 125

Query: 207 XVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKA 88
            V  LKP R YC +GRLS E+GWKY+++V KLE++RK K+
Sbjct: 126 RVLRLKPSRKYCTIGRLSSEVGWKYKNIVSKLEERRKIKS 165


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1225

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 99  KGKAVKRVAYEKXLKRITKDAGEKVSKATTP 7
           KGK V R+ Y+     +  D+GE+++K   P
Sbjct: 540 KGKTVGRLNYDMKFHAVVPDSGEEITKVDGP 570


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = -2

Query: 120 RKLEDKRKGKAVKRVAYEKXLKRITKDAGEKVSKATTPFT 1
           R  + KR+ K  +R+AYE+ LKR  K   EK +K++   T
Sbjct: 647 RIAQQKREEK--RRLAYEESLKRHAKKLHEKKTKSSQDAT 684


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 254 GHPSYVRSLLRAFLPRSVLCGIMP 325
           G+ SY+ + L+AFLP++V   + P
Sbjct: 381 GNESYLSNFLKAFLPKTVCDYLFP 404


>SPAC1B9.02c |sck1||serine/threonine protein kinase
           Sck1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 696

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +2

Query: 356 ALKWKGPRAGFTLHLLRRNDISLSLFLKKLPEMLICSXRTTTTLFPSRRTLAMTA 520
           AL+  G      ++L+R+ND +    +KK+ + LI   +  T     R  L  T+
Sbjct: 304 ALRLIGKGTFGQVYLVRKNDTNRIYAMKKISKKLIVRKKEVTHTLGERNILVRTS 358


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -2

Query: 432  NKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMI 316
            N+ + MS   KRC     RG  HF    + L+  ++ ++
Sbjct: 1323 NRTRQMSVYGKRCCNKSCRGSVHFEYNDEQLYNQIKFLL 1361


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 275 SLLRAFLPRSVLCGIMPLTVFHRILDGAL 361
           S L AFLP+  LC ++PL    + L G L
Sbjct: 693 SSLFAFLPQLSLCMLIPLVFGKKNLPGTL 721


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,357,453
Number of Sequences: 5004
Number of extensions: 45787
Number of successful extensions: 115
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)