Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV1a17r
(607 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0071 - 522920-523063,524125-524212,524289-524677 202 2e-52
03_06_0010 + 30990002-30990273,30990372-30990488,30990581-309906... 201 3e-52
03_06_0007 - 30975910-30975921,30976660-30976747,30976850-309769... 111 5e-25
11_04_0056 + 12942802-12942920,12943022-12943115 58 4e-09
01_06_0707 + 31355929-31356244,31356766-31356992,31357081-313572... 38 0.008
04_03_0232 - 13049649-13052807 31 0.71
02_05_0024 + 25152090-25153151,25153232-25154145,25154499-251547... 30 1.2
05_04_0347 + 20479682-20479753,20480136-20480813,20481143-204821... 28 5.0
07_01_1106 - 10187609-10190041,10190292-10191932 27 8.7
04_03_0148 + 11869929-11869968,11870000-11870421 27 8.7
>07_01_0071 - 522920-523063,524125-524212,524289-524677
Length = 206
Score = 202 bits (493), Expect = 2e-52
Identities = 94/184 (51%), Positives = 127/184 (69%)
Frame = -2
Query: 594 VVKMTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRXEQINISGNFFRNKLKLM 415
+V +G + +V+D R H+LGRLA+++AK LL G +VVVVR E++ ISG R K+K +
Sbjct: 1 MVSGSGLCTRRVVVDARHHMLGRLASLVAKELLNGQRVVVVRCEEMCISGGLVRQKMKYL 60
Query: 414 SFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNX 235
FLRKR N P+ GP HFRAPS+I W+TVRGMIPHKT RG+ AL L+ +DG PPP+D
Sbjct: 61 RFLRKRMNTKPSHGPIHFRAPSRIFWRTVRGMIPHKTPRGEAALANLKAFDGVPPPYDRT 120
Query: 234 XXXXXXXXXXVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKXLK 55
V L+PG YC +G+LS E+GW Y D +R+LE+KRK KA +VAYE+ K
Sbjct: 121 KRMVVPDALKVLRLQPGHKYCLLGQLSKEVGWNYHDTIRELEEKRKEKA--KVAYERR-K 177
Query: 54 RITK 43
++T+
Sbjct: 178 QLTR 181
>03_06_0010 +
30990002-30990273,30990372-30990488,30990581-30990668,
30991505-30991648
Length = 206
Score = 201 bits (491), Expect = 3e-52
Identities = 95/184 (51%), Positives = 128/184 (69%)
Frame = -2
Query: 594 VVKMTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRXEQINISGNFFRNKLKLM 415
+V +G +V+D R H+LGRLA++IAK LL G +VVVVR E+I +SG R K+K +
Sbjct: 1 MVSGSGVCAPRVVVDARHHMLGRLASIIAKELLNGQRVVVVRCEEICMSGGLVRQKMKYL 60
Query: 414 SFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNX 235
FLRKR N P+ GP HFR+P+KILW+TVRGMIPHKT+RG+ AL RL+ Y+G PPP+D
Sbjct: 61 RFLRKRMNTKPSHGPIHFRSPAKILWRTVRGMIPHKTKRGEAALARLKAYEGVPPPYDRT 120
Query: 234 XXXXXXXXXXVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKXLK 55
V L+PG YC +G+LS E+GW Y D +R+LE+KRK KA +VAY++ K
Sbjct: 121 KRMVIPDALKVLRLQPGHKYCLLGQLSKEVGWNYYDTIRELEEKRKEKA--KVAYDRR-K 177
Query: 54 RITK 43
++ K
Sbjct: 178 QLAK 181
>03_06_0007 -
30975910-30975921,30976660-30976747,30976850-30976966,
30977081-30977154
Length = 96
Score = 111 bits (266), Expect = 5e-25
Identities = 47/92 (51%), Positives = 61/92 (66%)
Frame = -2
Query: 393 NVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXX 214
N P+ GP HFR+P+KILW+TVRGMIPHKT+RG+ AL RL+ Y+ PP+D
Sbjct: 2 NTKPSHGPIHFRSPAKILWRTVRGMIPHKTKRGEAALARLKAYEVVTPPYDRTKRMVIPD 61
Query: 213 XXXVFCLKPGRNYCHVGRLSHEIGWKYRDVVR 118
V L+PG YC +G+LS E+GW Y D +R
Sbjct: 62 ALKVLRLQPGHKYCLLGQLSKEVGWNYYDTIR 93
>11_04_0056 + 12942802-12942920,12943022-12943115
Length = 70
Score = 58.4 bits (135), Expect = 4e-09
Identities = 25/56 (44%), Positives = 33/56 (58%)
Frame = -2
Query: 300 RGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXVFCLKPGRNYCHVGRLSHEIGWKY 133
RG+ AL RL+ Y+G PPP+D V L+PG YC +G+LS E+GW Y
Sbjct: 9 RGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQLSKEVGWNY 64
>01_06_0707 +
31355929-31356244,31356766-31356992,31357081-31357257,
31357355-31357510,31357778-31358054,31358192-31358306,
31360349-31360634,31361196-31361381,31361663-31361833,
31362307-31362426
Length = 676
Score = 37.5 bits (83), Expect = 0.008
Identities = 34/118 (28%), Positives = 48/118 (40%), Gaps = 12/118 (10%)
Frame = -2
Query: 558 VIDGRGHLLGRLAAVIAKVLLEGNK------------VVVVRXEQINISGNFFRNKLKLM 415
V+D +LGRLA+ IA + N+ VVVV E++ +SG KL
Sbjct: 541 VVDATDKILGRLASTIAVHIRGKNEATYTPSVDMGAFVVVVNAEKVAVSGKKRSQKLYRR 600
Query: 414 SFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFD 241
R R P +I+ VRGM+P K G+ L+ Y G P +
Sbjct: 601 HSGRPGGMKEETFDQLQKRIPERIIEHAVRGMLP-KGRLGRRLFTHLKVYKGAEHPHE 657
>04_03_0232 - 13049649-13052807
Length = 1052
Score = 31.1 bits (67), Expect = 0.71
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 90 PCPSSCLQAYEQHHGISIQFHGTVCLH 170
PCPS+CL+ Y H IS+Q LH
Sbjct: 763 PCPSNCLKPYSAHCYISVQDEMQTNLH 789
>02_05_0024 +
25152090-25153151,25153232-25154145,25154499-25154709,
25154757-25154921
Length = 783
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/65 (32%), Positives = 28/65 (43%)
Frame = -3
Query: 518 QSSPRSFSKGTKLLWFAXNKSTSLATSLGTNSSLCHSCVRGAT*ILLVDLSILELHLRFY 339
Q+SP + +L WF N + S LG C + T +DLS L + Y
Sbjct: 567 QNSPTDNTSSERLQWFRENSTVS---ELGLEPGQCKVFIESDTVGRNLDLSSLASFEQLY 623
Query: 338 GRL*E 324
GRL E
Sbjct: 624 GRLSE 628
>05_04_0347 +
20479682-20479753,20480136-20480813,20481143-20482195,
20482345-20482406,20482491-20482541,20482635-20482719,
20483253-20483342,20483472-20483563,20483704-20483728
Length = 735
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = -2
Query: 393 NVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPP 247
NV R P FR P+K + +T R I R ++T PPP
Sbjct: 652 NVRANRVPESFRKPNKGIQETARSQISSSKSATPAQTRSIKTRAPNPPP 700
>07_01_1106 - 10187609-10190041,10190292-10191932
Length = 1357
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 374 PRAGFTLHLLRRNDISLSLFLKKLPEMLIC 463
P G +LH+L ++S L+ LP+ L+C
Sbjct: 375 PSLGSSLHMLSALNLSCCYSLRALPDSLVC 404
>04_03_0148 + 11869929-11869968,11870000-11870421
Length = 153
Score = 27.5 bits (58), Expect = 8.7
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -3
Query: 554 SMAVVICWAVWRQSSPRSF 498
S+ ++ICW VW++ + R F
Sbjct: 99 SLVLLICWMVWKERNARVF 117
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,332,673
Number of Sequences: 37544
Number of extensions: 336438
Number of successful extensions: 828
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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