Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1a17f
         (644 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY051640-1|AAK93064.1|  205|Drosophila melanogaster GM13948p pro...   269   2e-72
AE014297-307|AAF51987.1|  205|Drosophila melanogaster CG1475-PB ...   269   2e-72
AF251006-1|AAK28427.1| 1500|Drosophila melanogaster host cell fa...    28   9.4  

>AY051640-1|AAK93064.1|  205|Drosophila melanogaster GM13948p
           protein.
          Length = 205

 Score =  269 bits (660), Expect = 2e-72
 Identities = 118/203 (58%), Positives = 153/203 (75%)
 Frame = +2

Query: 23  MTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFL 202
           MTG +N+ +VIDGRGHLLGRLA+V+AK LL+G KV VVRCE++N+SG+F+RNK+K +++L
Sbjct: 1   MTGLTNRTVVIDGRGHLLGRLASVVAKYLLQGGKVAVVRCEELNLSGHFYRNKIKFLAYL 60

Query: 203 RKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXX 382
           RKRCNVNPARGPFHFRAPS+I +K VRGMIPHKT+RG+ AL RLR +DG P P+D     
Sbjct: 61  RKRCNVNPARGPFHFRAPSRIFYKAVRGMIPHKTKRGQAALARLRVFDGIPSPYDKRRRV 120

Query: 383 XXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRIT 562
                     L+  R YC VGRLSHE+GW Y+DV++ LE KRK K    + + ++LK++T
Sbjct: 121 VVPIAMRVLTLRSDRKYCQVGRLSHEVGWHYQDVIKSLERKRKAKLRVTLKHNRELKKLT 180

Query: 563 KDAGEKVSKATTPFTTIIQSYGY 631
             A E ++KA  PF  II+SYGY
Sbjct: 181 VKARENIAKAAEPFNKIIKSYGY 203


>AE014297-307|AAF51987.1|  205|Drosophila melanogaster CG1475-PB
           protein.
          Length = 205

 Score =  269 bits (660), Expect = 2e-72
 Identities = 118/203 (58%), Positives = 153/203 (75%)
 Frame = +2

Query: 23  MTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFL 202
           MTG +N+ +VIDGRGHLLGRLA+V+AK LL+G KV VVRCE++N+SG+F+RNK+K +++L
Sbjct: 1   MTGLTNRTVVIDGRGHLLGRLASVVAKYLLQGGKVAVVRCEELNLSGHFYRNKIKFLAYL 60

Query: 203 RKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXX 382
           RKRCNVNPARGPFHFRAPS+I +K VRGMIPHKT+RG+ AL RLR +DG P P+D     
Sbjct: 61  RKRCNVNPARGPFHFRAPSRIFYKAVRGMIPHKTKRGQAALARLRVFDGIPSPYDKRRRV 120

Query: 383 XXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRIT 562
                     L+  R YC VGRLSHE+GW Y+DV++ LE KRK K    + + ++LK++T
Sbjct: 121 VVPIAMRVLTLRSDRKYCQVGRLSHEVGWHYQDVIKSLERKRKAKLRVTLKHNRELKKLT 180

Query: 563 KDAGEKVSKATTPFTTIIQSYGY 631
             A E ++KA  PF  II+SYGY
Sbjct: 181 VKARENIAKAAEPFNKIIKSYGY 203


>AF251006-1|AAK28427.1| 1500|Drosophila melanogaster host cell factor
            HCF protein.
          Length = 1500

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
 Frame = +3

Query: 429  ITVM*ADCPMKLDGNTVMLFVSLKTRGRARLLRELPMKR----NLRGSPRMLVRRCRRRQ 596
            +TVM  +  M   GN VM+     +         L  K+    N  GSPR +    +   
Sbjct: 919  VTVMSTNTSMAASGNKVMVLPGTSSNNSPATTTALSAKKSFVFNAGGSPRTVTLATKSIN 978

Query: 597  HHSLPSSNPM 626
              S+P S P+
Sbjct: 979  AKSIPQSQPV 988


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,523,147
Number of Sequences: 53049
Number of extensions: 665725
Number of successful extensions: 1816
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1816
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2724262200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)