Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV1a16r
(926 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 339 2e-93
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 339 2e-93
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 339 2e-93
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 105 3e-23
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 56 5e-08
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 56 5e-08
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 54 1e-07
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 49 4e-06
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 49 4e-06
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 49 4e-06
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 44 2e-04
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 44 2e-04
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 36 0.041
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 30 2.7
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 30 2.7
U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore co... 30 2.7
AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical ... 30 2.7
Z78064-8|CAO82042.1| 357|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z46996-2|CAA87102.1| 679|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z19158-2|CAA79571.3| 262|Caenorhabditis elegans Hypothetical pr... 29 4.7
AL033514-38|CAA22111.2| 341|Caenorhabditis elegans Hypothetical... 29 4.7
AC024805-16|AAK39336.1| 448|Caenorhabditis elegans Hypothetical... 29 4.7
U97015-9|AAB52349.1| 343|Caenorhabditis elegans Hypothetical pr... 29 6.2
U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like p... 28 8.2
U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like p... 28 8.2
AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like ... 28 8.2
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 339 bits (833), Expect = 2e-93
Identities = 158/214 (73%), Positives = 180/214 (84%)
Frame = -3
Query: 903 LKLLDAILPPARPTDKPPASFPCKTYTKXGGIGTVPVGRVETGVLKPGTIVVFAPANITT 724
L+ LD+I+PP RPTD+P P + K GGIGTVPVGRVETG++KPG +V FAP N+TT
Sbjct: 195 LEALDSIIPPQRPTDRP-LRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTT 253
Query: 723 EVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVL 544
EVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P K A F AQVI++
Sbjct: 254 EVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIM 313
Query: 543 NHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPS 364
NHPGQISNGYTPVLDCHTAHIACKF E+KEKVDRRTGK E PK +KSGDA IV L+P+
Sbjct: 314 NHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPT 373
Query: 363 KPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 262
KPLCVESF ++ PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 374 KPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSV 407
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 339 bits (833), Expect = 2e-93
Identities = 158/214 (73%), Positives = 180/214 (84%)
Frame = -3
Query: 903 LKLLDAILPPARPTDKPPASFPCKTYTKXGGIGTVPVGRVETGVLKPGTIVVFAPANITT 724
L+ LD+I+PP RPTD+P P + K GGIGTVPVGRVETG++KPG +V FAP N+TT
Sbjct: 229 LEALDSIIPPQRPTDRP-LRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTT 287
Query: 723 EVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVL 544
EVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P K A F AQVI++
Sbjct: 288 EVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIM 347
Query: 543 NHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPS 364
NHPGQISNGYTPVLDCHTAHIACKF E+KEKVDRRTGK E PK +KSGDA IV L+P+
Sbjct: 348 NHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPT 407
Query: 363 KPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 262
KPLCVESF ++ PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 408 KPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSV 441
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 339 bits (833), Expect = 2e-93
Identities = 158/214 (73%), Positives = 180/214 (84%)
Frame = -3
Query: 903 LKLLDAILPPARPTDKPPASFPCKTYTKXGGIGTVPVGRVETGVLKPGTIVVFAPANITT 724
L+ LD+I+PP RPTD+P P + K GGIGTVPVGRVETG++KPG +V FAP N+TT
Sbjct: 229 LEALDSIIPPQRPTDRP-LRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTT 287
Query: 723 EVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVL 544
EVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P K A F AQVI++
Sbjct: 288 EVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIM 347
Query: 543 NHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPS 364
NHPGQISNGYTPVLDCHTAHIACKF E+KEKVDRRTGK E PK +KSGDA IV L+P+
Sbjct: 348 NHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPT 407
Query: 363 KPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 262
KPLCVESF ++ PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 408 KPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSV 441
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 105 bits (253), Expect = 3e-23
Identities = 63/215 (29%), Positives = 110/215 (51%), Gaps = 1/215 (0%)
Frame = -3
Query: 903 LKLLDAILPPARPTDKPPASFPCKTYTKXGGIGTVPVGRVETGVLKPGTIVVFAPANITT 724
++ +D +LP + P C K +GTV +G++E+G ++ G +V P
Sbjct: 322 IEFIDVLLPSYKRDFNGPVR--CTVAEKYSEMGTVIIGKMESGCVQKGDTLVVMPNKQPV 379
Query: 723 EVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVL 544
+V + + V GDN+ F +K + EL+ G++ S ++ K F A+V+VL
Sbjct: 380 QVLQIWADDVETERVVAGDNIKFKLKGIEENELQGGFII-CSPDSLAKTGRVFDAEVLVL 438
Query: 543 NHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPS 364
H I++GY+ VL +A + +D++TG+ K +K + I+ L
Sbjct: 439 EHRSIIASGYSCVLHIQSAVEEVTVKGVIATIDKKTGEKKRA--KFVKQDEKCIMRLESP 496
Query: 363 KPLCVESFQEFPPLGRFAVRDMRQTVAVG-VIKAV 262
+P +E F+E+P LGRF +RD +T+A+G V+K V
Sbjct: 497 EPFVLEPFKEYPYLGRFTLRDEGKTIAIGKVLKVV 531
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical protein
K07A12.4b protein.
Length = 592
Score = 55.6 bits (128), Expect = 5e-08
Identities = 42/215 (19%), Positives = 90/215 (41%), Gaps = 1/215 (0%)
Frame = -3
Query: 903 LKLLDAILPPARPTDKPPASFPCKTYTKXGGIGTVPVGRVETGVLKPGTIVVFAPANITT 724
L+L+D+ + P P+D P K V G++E+G ++ V+ +++T
Sbjct: 376 LELIDSFVAPQPPSDGP-LRIGISDVLKVASNQLVVSGKIESGEVEKDD-KVYIMSSVTA 433
Query: 723 EVKSVEMHHEALQEAVPGDNVGFNVKNVSVKE-LRRGYVAGDSKNNPPKGAADFTAQVIV 547
+++ + GD + ++ E ++ G V + + + F +++
Sbjct: 434 ATVKECANNDGSRHCFAGDYILLTLQGTFEPESIQTGSVVVRAGPDTLIPSKKFEVRLVA 493
Query: 546 LNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVP 367
I G L H+ + C F + +++ G+ + P+ I G +A+V +
Sbjct: 494 FEIAMPIIKGAKAELYAHSLCVPCTFTNLLYTINKSNGEILKKGPRFIAKGASAVVEIET 553
Query: 366 SKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 262
+ +E+F LGR R T+A G+++ V
Sbjct: 554 EYDIAIETFTSCRALGRVTFRAGGNTIAAGIVEKV 588
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical protein
K07A12.4a protein.
Length = 610
Score = 55.6 bits (128), Expect = 5e-08
Identities = 42/215 (19%), Positives = 90/215 (41%), Gaps = 1/215 (0%)
Frame = -3
Query: 903 LKLLDAILPPARPTDKPPASFPCKTYTKXGGIGTVPVGRVETGVLKPGTIVVFAPANITT 724
L+L+D+ + P P+D P K V G++E+G ++ V+ +++T
Sbjct: 394 LELIDSFVAPQPPSDGP-LRIGISDVLKVASNQLVVSGKIESGEVEKDD-KVYIMSSVTA 451
Query: 723 EVKSVEMHHEALQEAVPGDNVGFNVKNVSVKE-LRRGYVAGDSKNNPPKGAADFTAQVIV 547
+++ + GD + ++ E ++ G V + + + F +++
Sbjct: 452 ATVKECANNDGSRHCFAGDYILLTLQGTFEPESIQTGSVVVRAGPDTLIPSKKFEVRLVA 511
Query: 546 LNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVP 367
I G L H+ + C F + +++ G+ + P+ I G +A+V +
Sbjct: 512 FEIAMPIIKGAKAELYAHSLCVPCTFTNLLYTINKSNGEILKKGPRFIAKGASAVVEIET 571
Query: 366 SKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 262
+ +E+F LGR R T+A G+++ V
Sbjct: 572 EYDIAIETFTSCRALGRVTFRAGGNTIAAGIVEKV 606
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 54.4 bits (125), Expect = 1e-07
Identities = 41/167 (24%), Positives = 73/167 (43%), Gaps = 5/167 (2%)
Frame = -3
Query: 885 ILPPARP-TDKPPASFPCKTYTKXGGIGTVPVGRVETGVLKPGTIVVFAPAN----ITTE 721
I+P R + PA F G+GT+ G + +G ++ I++ P + +
Sbjct: 360 IVPLRRQLNENDPAHFQIDDIYWVDGVGTIASGTLLSGTIRLNDILLLGPTSNGDFMPIP 419
Query: 720 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLN 541
+KS+ + G + F +K + K++R+G V D K P F A+++VL+
Sbjct: 420 IKSIHRKRMPVGIVKCGQSASFALKKIPKKDVRKGMVLVDPKVKPVASMV-FEAEILVLH 478
Query: 540 HPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIK 400
HP I Y +L + + ++V RTG +V K I+
Sbjct: 479 HPTTIKPNYQAMLHIGSVRQTATLVSMGKEV-LRTGDRDKVQFKFIR 524
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 49.2 bits (112), Expect = 4e-06
Identities = 58/221 (26%), Positives = 96/221 (43%), Gaps = 7/221 (3%)
Frame = -3
Query: 903 LKLLD-AILPPARPTDKPPASFPCKTYTKXGGIGTVPVGRVETGVLKPGT-IVVFAPANI 730
L++LD + P R ++ P F + G GTV G++E G+LK G I +
Sbjct: 234 LEVLDNKFVIPERKVNEEPM-FAAEHVYSIVGRGTVITGKLERGILKRGDKIEIVGGTKD 292
Query: 729 TTEVKSV----EMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFT 562
T VKSV E + + +A PGD +G ++ + K++RRG V + + K
Sbjct: 293 GTTVKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCVL-LPQGHKHKVTDKVK 351
Query: 561 AQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKS-IKSGDAA 385
AQ+ VL TP+ + + H+ + +G S + K + G++A
Sbjct: 352 AQLYVLKE--SEGGAKTPIANYFSEHVF--------SLTWDSGASVRIIGKDFVMPGESA 401
Query: 384 IVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 262
V L + + +E P RF +R +T+ GV V
Sbjct: 402 EVELSLNSQMFIE------PQQRFTIRKGAKTIGTGVFTDV 436
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 49.2 bits (112), Expect = 4e-06
Identities = 58/221 (26%), Positives = 96/221 (43%), Gaps = 7/221 (3%)
Frame = -3
Query: 903 LKLLD-AILPPARPTDKPPASFPCKTYTKXGGIGTVPVGRVETGVLKPGT-IVVFAPANI 730
L++LD + P R ++ P F + G GTV G++E G+LK G I +
Sbjct: 235 LEVLDNKFVIPERKVNEEPM-FAAEHVYSIVGRGTVITGKLERGILKRGDKIEIVGGTKD 293
Query: 729 TTEVKSV----EMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFT 562
T VKSV E + + +A PGD +G ++ + K++RRG V + + K
Sbjct: 294 GTTVKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCVL-LPQGHKHKVTDKVK 352
Query: 561 AQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKS-IKSGDAA 385
AQ+ VL TP+ + + H+ + +G S + K + G++A
Sbjct: 353 AQLYVLKE--SEGGAKTPIANYFSEHVF--------SLTWDSGASVRIIGKDFVMPGESA 402
Query: 384 IVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 262
V L + + +E P RF +R +T+ GV V
Sbjct: 403 EVELSLNSQMFIE------PQQRFTIRKGAKTIGTGVFTDV 437
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 49.2 bits (112), Expect = 4e-06
Identities = 58/221 (26%), Positives = 96/221 (43%), Gaps = 7/221 (3%)
Frame = -3
Query: 903 LKLLD-AILPPARPTDKPPASFPCKTYTKXGGIGTVPVGRVETGVLKPGT-IVVFAPANI 730
L++LD + P R ++ P F + G GTV G++E G+LK G I +
Sbjct: 235 LEVLDNKFVIPERKVNEEPM-FAAEHVYSIVGRGTVITGKLERGILKRGDKIEIVGGTKD 293
Query: 729 TTEVKSV----EMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFT 562
T VKSV E + + +A PGD +G ++ + K++RRG V + + K
Sbjct: 294 GTTVKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCVL-LPQGHKHKVTDKVK 352
Query: 561 AQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKS-IKSGDAA 385
AQ+ VL TP+ + + H+ + +G S + K + G++A
Sbjct: 353 AQLYVLKE--SEGGAKTPIANYFSEHVF--------SLTWDSGASVRIIGKDFVMPGESA 402
Query: 384 IVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 262
V L + + +E P RF +R +T+ GV V
Sbjct: 403 EVELSLNSQMFIE------PQQRFTIRKGAKTIGTGVFTDV 437
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 44.0 bits (99), Expect = 2e-04
Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Frame = -3
Query: 900 KLLDAI--LPPARPTDKPPASFPCKTYTKXGGIGTVPVGRVETGVLKPGTIVVFA--PAN 733
+L+DA+ LP +K P + T G GTV VG +E GVLK G V
Sbjct: 221 RLIDALDSLPEPDRNEKDTFVMPIASKTAITGRGTVIVGTLERGVLKKGDKVEIKGDGQT 280
Query: 732 ITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAG 604
+ T +++ ++++E GD+ G + V ++RG AG
Sbjct: 281 LQTTASDIQVFGKSVKEVRAGDHCGVLCRGVKGDTVKRGMWAG 323
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 44.0 bits (99), Expect = 2e-04
Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Frame = -3
Query: 900 KLLDAI--LPPARPTDKPPASFPCKTYTKXGGIGTVPVGRVETGVLKPGTIVVFA--PAN 733
+L+DA+ LP +K P + T G GTV VG +E GVLK G V
Sbjct: 221 RLIDALDSLPEPDRNEKDTFVMPIASKTAITGRGTVIVGTLERGVLKKGDKVEIKGDGQT 280
Query: 732 ITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAG 604
+ T +++ ++++E GD+ G + V ++RG AG
Sbjct: 281 LQTTASDIQVFGKSVKEVRAGDHCGVLCRGVKGDTVKRGMWAG 323
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 35.9 bits (79), Expect = 0.041
Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 4/109 (3%)
Frame = -3
Query: 852 PASFPCKTYTKXGGIGTVPVGRVETGVLKPGTIVVFAPANITT----EVKSVEMHHEALQ 685
PA F + +G V G + G L G V+ P T V S+ +A+
Sbjct: 402 PAFFTIEELYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDGTFEKITVGSIRRSRQAVG 461
Query: 684 EAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNH 538
PG+ ++ LRRG V + + PP +FTA +++L H
Sbjct: 462 CVNPGEAASISLNLPDGVSLRRGMVLAEIDHQPPV-CYEFTANLLLLCH 509
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 29.9 bits (64), Expect = 2.7
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = -3
Query: 813 GIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNV 649
G GTV G V GVL+ T + F N VK++E + + + G F V
Sbjct: 214 GQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLETWKQRVGQVAAGARAAFLV 268
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 29.9 bits (64), Expect = 2.7
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = -3
Query: 813 GIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNV 649
G GTV G V GVL+ T + F N VK++E + + + G F V
Sbjct: 173 GQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLETWKQRVGQVAAGARAAFLV 227
>U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore
complex protein protein11 protein.
Length = 805
Score = 29.9 bits (64), Expect = 2.7
Identities = 28/96 (29%), Positives = 38/96 (39%), Gaps = 3/96 (3%)
Frame = +2
Query: 536 GWLSTMT*AVKSAAPLGGLFLESPAT*PRRNSLTDTFFTLKPTLSPGTASWRASW---CI 706
G ST T A S AP GGLF + T P + T F T +P T
Sbjct: 446 GASSTTTPA--STAPTGGLFGAATTTAPAAAAPTGGLFGAATTTAPATVGPTGGLFGAAT 503
Query: 707 STDLTSVVMLAGAKTTMVPGFNTPVSTLPTGTVPIP 814
+T + L +T+ + P +T T T+P P
Sbjct: 504 TTTPATAATLGQTPSTVSATPSLPTTTSTTSTLPKP 539
Score = 29.5 bits (63), Expect = 3.6
Identities = 32/123 (26%), Positives = 46/123 (37%), Gaps = 5/123 (4%)
Frame = +2
Query: 554 T*AVKSAAPLGGLFLESPAT*PRRNSLTDTFFTLKPTLSPGTASWRASWCISTDLTSVVM 733
T A +AAP GGLF + T P T F T +P TA+ + T +
Sbjct: 468 TTAPAAAAPTGGLFGAATTTAPATVGPTGGLFGAATTTTPATAATLGQTPSTVSATPSLP 527
Query: 734 LAGAKTTMVPGFNTPVSTLPTG----TVPIPPXFVYVLQG-KDAGGLSVGRAGGRMASKS 898
+ T+ +P TL G + P+ + G K A S G G S +
Sbjct: 528 TTTSTTSTLPKPAEATPTLGLGLGLTSTPLAKGTGWTTSGLKGAATTSAGLKIGASGSDT 587
Query: 899 FNE 907
+E
Sbjct: 588 LSE 590
>AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical
protein F49D11.10 protein.
Length = 766
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -3
Query: 768 KPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKN 643
KPGTI F P ITTE K H L+ + GD +++
Sbjct: 360 KPGTIQWFDPVTITTESKM----HVTLENTIDGDMTSRGIRS 397
>Z78064-8|CAO82042.1| 357|Caenorhabditis elegans Hypothetical
protein F57B1.9a protein.
Length = 357
Score = 29.1 bits (62), Expect = 4.7
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +2
Query: 146 MKYRSCMKNCAVNSSSYFLPLVAFSAALVTLPPPASLKLTALMTPTATVCLM 301
M Y +C ++N Y L ++A+V LPPP ++ + ++ A C++
Sbjct: 188 MMYNNCRYRYSLNVLHY--ELYCQTSAVVNLPPPKAISIMEIVIQFAIPCII 237
>Z46996-2|CAA87102.1| 679|Caenorhabditis elegans Hypothetical
protein C34C12.2 protein.
Length = 679
Score = 29.1 bits (62), Expect = 4.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 746 KTTMVPGFNTPVSTLPTGTVPIPPXFVYV 832
KT +P N PV + P+PP FVY+
Sbjct: 133 KTQALPRVNAPVLSSVPAKNPLPPKFVYI 161
>Z19158-2|CAA79571.3| 262|Caenorhabditis elegans Hypothetical
protein T23G5.3 protein.
Length = 262
Score = 29.1 bits (62), Expect = 4.7
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = +2
Query: 200 LPLVAFSAALVTLPPPASLKLTALMTPTATVCLMSRTAKRPRGGNSWKDST 352
+P+V + L PPP L +LM P TV + R K P G NS K T
Sbjct: 129 VPIVPRNLLLSKPPPPPPPPLPSLMQPKDTVQIPMR--KPPTGRNSKKIKT 177
>AL033514-38|CAA22111.2| 341|Caenorhabditis elegans Hypothetical
protein Y75B8A.33 protein.
Length = 341
Score = 29.1 bits (62), Expect = 4.7
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = -2
Query: 121 KRATNSFLFYIFYKACNVTLFYNLYKVIHNISETFC 14
KR NS++F I+ C + F Y++ + +C
Sbjct: 262 KRDVNSYVFVIWGVVCQILFFLTTYRIAELVVRIYC 297
>AC024805-16|AAK39336.1| 448|Caenorhabditis elegans Hypothetical
protein Y51H7C.1 protein.
Length = 448
Score = 29.1 bits (62), Expect = 4.7
Identities = 24/72 (33%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Frame = -3
Query: 888 AILPPARPTDKPPASFPCKTYTKXGGIGTVPVGRVETGVLKPGTIVVFAPANIT-TEVKS 712
++ P RP PPA+FP G I TV R G PG AP T V
Sbjct: 141 SVTPGGRPGSTPPATFP------PGSISTV---RYTPGPTPPGPWTYTAPPYYTYRTVPP 191
Query: 711 VEMHHEALQEAV 676
H+E + AV
Sbjct: 192 ASNHYETVPPAV 203
>U97015-9|AAB52349.1| 343|Caenorhabditis elegans Hypothetical
protein F48C1.8 protein.
Length = 343
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +1
Query: 736 GGGKDNNGTWFQHTSFNSADGHGTNTTXFCIRLAGERRRGLVSG 867
GGG DN + T F + +G RL G RRRG +G
Sbjct: 76 GGGGDNGWGYRPFTGFGGRNYYGGGGGGLLSRLFGWRRRGYNNG 119
>U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform b protein.
Length = 564
Score = 28.3 bits (60), Expect = 8.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 504 LDCHTAHIACKFAEIKEKVDRRTGKSTE 421
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform a protein.
Length = 690
Score = 28.3 bits (60), Expect = 8.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 504 LDCHTAHIACKFAEIKEKVDRRTGKSTE 421
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like
protein protein.
Length = 690
Score = 28.3 bits (60), Expect = 8.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 504 LDCHTAHIACKFAEIKEKVDRRTGKSTE 421
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,955,316
Number of Sequences: 27780
Number of extensions: 494501
Number of successful extensions: 1612
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1596
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2381234086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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