Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1a13r
         (855 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.01c |||spermidine family transporter |Schizosaccharomyces...    28   1.5  
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...    27   3.4  
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...    27   3.4  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   5.9  
SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|c...    26   5.9  

>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 580

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +2

Query: 737 LNGTANYNATTEPAIK-TSAVDNPKFYRLP 823
           LNG A  +ATTEP  +  SA DNP  Y++P
Sbjct: 18  LNG-AYQSATTEPEGQYRSATDNPSLYQVP 46


>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 397 RLIRDVIDVRSAPNYNCV*NLS*QYITCNVVST 299
           RLI    +  +AP Y  V   S +++TC +VS+
Sbjct: 35  RLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSS 67


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 397 RLIRDVIDVRSAPNYNCV*NLS*QYITCNVVST 299
           RLI    +  +AP Y  V   S +++TC +VS+
Sbjct: 35  RLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSS 67


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -2

Query: 221 TYFILEGGCCSIFFFEFLAWYL 156
           +YF+L+G    IF+F +L +++
Sbjct: 236 SYFLLDGSSSKIFYFNWLGFFV 257


>SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 374

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 17/45 (37%), Positives = 19/45 (42%)
 Frame = -3

Query: 481 FVFYYYHK*IKRALCLISYSLSFLRLVSRLIRDVIDVRSAPNYNC 347
           FVF   HK   R L  I Y LSF R+ S        V  + N  C
Sbjct: 180 FVFAIVHKDCMRILREIRYDLSFTRISSSPYLPETHVLMSENNEC 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,742,170
Number of Sequences: 5004
Number of extensions: 46466
Number of successful extensions: 81
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)