Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1a13f
         (670 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81494-4|CAB04050.2|  319|Caenorhabditis elegans Hypothetical pr...    28   5.2  
AL117195-26|CAB55037.1|  153|Caenorhabditis elegans Hypothetical...    28   5.2  
Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical pr...    28   6.9  
Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical pr...    28   6.9  
AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like prot...    28   6.9  

>Z81494-4|CAB04050.2|  319|Caenorhabditis elegans Hypothetical
           protein F02E9.3 protein.
          Length = 319

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = -1

Query: 415 GERFNTHSIKVPKNVRLQFINRNSGPTSHREHDTAGVR--LRAISCSLRIAFQTGTSAAL 242
           G+R  + +I V K    QF NR    T + + +T  +   L+ ++C +R  FQ GT+   
Sbjct: 88  GKRMTSRAIHVSKKWS-QF-NRREDKTDYLDDETMQILEDLKILNCKIRKRFQIGTTCPH 145

Query: 241 SV 236
           S+
Sbjct: 146 SL 147


>AL117195-26|CAB55037.1|  153|Caenorhabditis elegans Hypothetical
           protein Y57A10A.32 protein.
          Length = 153

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = +2

Query: 383 DFNRMCIETFTAIHGRTTMRHDLVHFIRHTSSDHYCEGRI*SLEQISIDGVTSYPER 553
           D  ++ I+TF  I+G    R D V F+    +    E  +  L Q + + +   P+R
Sbjct: 94  DLPQLLIDTFPTIYGDPETRVDYVDFVNSAQTQDQLEANLVMLYQNAEEHLAVEPQR 150


>Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical
           protein T06E4.3b protein.
          Length = 2514

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -1

Query: 403 NTHSIKVPKNVRLQFINRNSGPTSHREHDTAGVRLRAISCSLRIAFQTG 257
           N   I +PK+   + IN     T      +   +LRA++C+L++  +TG
Sbjct: 487 NFRFIGLPKSEPSELINLERFTTVLERSTSESTKLRAVNCALQLEKKTG 535


>Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical
           protein T06E4.3a protein.
          Length = 2531

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -1

Query: 403 NTHSIKVPKNVRLQFINRNSGPTSHREHDTAGVRLRAISCSLRIAFQTG 257
           N   I +PK+   + IN     T      +   +LRA++C+L++  +TG
Sbjct: 487 NFRFIGLPKSEPSELINLERFTTVLERSTSESTKLRAVNCALQLEKKTG 535


>AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like protein
           protein.
          Length = 2514

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -1

Query: 403 NTHSIKVPKNVRLQFINRNSGPTSHREHDTAGVRLRAISCSLRIAFQTG 257
           N   I +PK+   + IN     T      +   +LRA++C+L++  +TG
Sbjct: 487 NFRFIGLPKSEPSELINLERFTTVLERSTSESTKLRAVNCALQLEKKTG 535


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,583,319
Number of Sequences: 27780
Number of extensions: 323114
Number of successful extensions: 727
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)