Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1a13f
         (670 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   2.6  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    22   4.6  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   4.6  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   4.6  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   8.0  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    21   8.0  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = -1

Query: 421 YSGERFNTHSIKVPKNVRLQFINRNSGPTSHREHD 317
           Y   +  TH    P  V+   + R+ GP S  + D
Sbjct: 48  YENNQLPTHGKGTPTVVKTNILIRSMGPVSELDMD 82


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 396 CVLKRSPLYTGALLCATI 449
           C+LK  PL+TG  + + I
Sbjct: 39  CILKPKPLWTGKQISSLI 56


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 659 GYHGTSLISSTAVIAEQPY 603
           GY G +L+  + V  +QPY
Sbjct: 91  GYKGRALVVVSCVTKDQPY 109


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 659 GYHGTSLISSTAVIAEQPY 603
           GY G +L+  + V  +QPY
Sbjct: 91  GYKGRALVVVSCVTKDQPY 109


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = -2

Query: 351 ETLAQHLTGN 322
           ETLAQ LTGN
Sbjct: 654 ETLAQFLTGN 663


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 659 GYHGTSLISSTAVIAEQPYNRRID 588
           G+ GT    S  V+ ++PY + +D
Sbjct: 71  GFAGTPGYLSPEVLKKEPYGKPVD 94


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,990
Number of Sequences: 438
Number of extensions: 3994
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)