Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV1a11r
(806 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0286 + 16504756-16504953,16505364-16505588,16505739-165057... 33 0.20
02_03_0351 + 18030656-18030823,18030963-18031113,18031214-180313... 31 1.4
03_02_0532 + 9255634-9257034,9257234-9257347,9257975-9258239,925... 30 1.9
01_05_0671 - 24164490-24164544,24164920-24165086,24165787-241659... 30 1.9
01_05_0302 + 20637139-20637291,20637390-20637476,20637609-206378... 29 3.3
12_01_0894 - 8661025-8661147,8661701-8661769,8661798-8661800 29 4.4
06_01_1145 - 9575173-9575553,9575712-9575858,9575971-9576024,957... 29 4.4
04_03_0755 + 19310648-19311603,19312420-19312633 29 4.4
03_05_0065 + 20450814-20452748 29 4.4
12_01_0059 + 494876-494924,496060-496211,496344-496531,496971-49... 29 5.8
11_01_0058 + 438000-438230,438847-438902,440003-440117,440314-44... 29 5.8
10_08_0106 + 14842748-14843085,14843122-14843250,14844145-148442... 29 5.8
05_01_0570 + 5061600-5062142,5062790-5062972 29 5.8
02_04_0411 + 22670418-22670499,22670708-22671045 29 5.8
01_05_0612 - 23652121-23652400,23653031-23654427 29 5.8
10_08_0108 + 14860469-14861032 28 7.6
06_03_0739 + 24004629-24005219 28 7.6
05_04_0069 - 17639386-17641380 28 7.6
02_04_0343 - 22166148-22166318,22166422-22166465,22166563-221666... 28 7.6
>10_08_0286 +
16504756-16504953,16505364-16505588,16505739-16505794,
16505913-16506007,16506696-16506796,16507043-16507234
Length = 288
Score = 33.5 bits (73), Expect = 0.20
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = +3
Query: 21 GLDPRGETGNANVNTRVSDGQRSTVPKSRHQRGRGCGGEDHRSHPGTGRDHRRPKHQSTT 200
GLD + +G +NT+V G T R R ED+ +HP D+ P T
Sbjct: 100 GLDDKWYSGRIFLNTKVEAGDSLTQTNGREARFWTFVEEDNGNHPVVNADYIPPHWNETI 159
Query: 201 C 203
C
Sbjct: 160 C 160
>02_03_0351 +
18030656-18030823,18030963-18031113,18031214-18031309,
18032027-18032103,18032627-18032706,18033216-18033276,
18034153-18034220,18034312-18034393,18034552-18034638,
18035009-18035086,18035336-18035455,18035554-18035730
Length = 414
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +1
Query: 187 TRAQHVSGDSTVNGSVTLDAGILIDGPDLDVTELLRIRPSERCSTPTSSPNNLVI 351
TRA H SG+ST+ G++ + D PD+D L+ + P+ SP + I
Sbjct: 132 TRALHFSGNSTIEGAINWLSEHQED-PDIDEPLLVPANTITEANKPSLSPEEMKI 185
>03_02_0532 +
9255634-9257034,9257234-9257347,9257975-9258239,
9258346-9258461
Length = 631
Score = 30.3 bits (65), Expect = 1.9
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = +3
Query: 12 FRIGLDPRGETGNANVNTRVSDGQRSTVPKSRHQRGRGCGGEDHRSHPGTGRDH 173
F + L R G A T+ SDG + PK + +G GED R H +H
Sbjct: 201 FGVPLSGRRSNGPAEPTTK-SDGDYRSTPKGNVEWAQGMAGED-RFHVAVSEEH 252
>01_05_0671 -
24164490-24164544,24164920-24165086,24165787-24165941,
24166291-24166458,24167471-24167552
Length = 208
Score = 30.3 bits (65), Expect = 1.9
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
Frame = -2
Query: 784 YAVYHYFVGPW-AC---CCGGCSYQPTKDYWWLHD---QH*PVSRYSC 662
+ +YH+ GPW C C GG Y+ Y L D +H PV SC
Sbjct: 83 HEIYHWVAGPWMKCSSPCDGGVRYRDVACYGNLSDATIKHYPVDDASC 130
>01_05_0302 +
20637139-20637291,20637390-20637476,20637609-20637836,
20638014-20638184,20638843-20638896,20639028-20639174,
20639326-20639706
Length = 406
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -3
Query: 726 TNPQRIIGGSTTNINQYPGIAALLYTWNWNQWWQSCGGN 610
TNPQ +IGGS + ++ Y + Y +++ W GGN
Sbjct: 251 TNPQFVIGGSLSPVSIY---GSTQYEYDYLVWKDPAGGN 286
>12_01_0894 - 8661025-8661147,8661701-8661769,8661798-8661800
Length = 64
Score = 29.1 bits (62), Expect = 4.4
Identities = 10/28 (35%), Positives = 12/28 (42%)
Frame = +2
Query: 116 RTRLWRRGPPESPWHWSRPPTSKTPEHN 199
R LW PE PW W + + HN
Sbjct: 33 RQGLWAYDNPEKPWEWRKNKRKASEHHN 60
>06_01_1145 -
9575173-9575553,9575712-9575858,9575971-9576024,
9576692-9576862,9577004-9577231,9577392-9577478,
9577600-9577761
Length = 409
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -3
Query: 726 TNPQRIIGGSTTNINQYPGIAALLYTWNWNQWWQSCGGN 610
TNPQ +IGGS + ++ Y Y +++ W GGN
Sbjct: 254 TNPQFVIGGSISPVSTY---GDTQYEYDYLVWKDPAGGN 289
>04_03_0755 + 19310648-19311603,19312420-19312633
Length = 389
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 30 PRGETGNANVNTRVS-DGQRSTVPKSRHQRGRGCGGED 140
P G V TR++ Q+ T + + QRG GCGG D
Sbjct: 73 PPGSPRGMAVGTRLAVQQQQPTKTQQQRQRGIGCGGAD 110
>03_05_0065 + 20450814-20452748
Length = 644
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 153 GDSGGPLLHNRVLVGVCSWGQYCADRRL 70
GD+ G + +N ++ G C GQ A RRL
Sbjct: 74 GDAAGVVAYNAMVAGYCRAGQLAAARRL 101
>12_01_0059 +
494876-494924,496060-496211,496344-496531,496971-497027,
497123-497282,497389-497457,497712-497837,497972-498091
Length = 306
Score = 28.7 bits (61), Expect = 5.8
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +2
Query: 125 LWRRGPPESPWHWSR 169
LW G PE PW W R
Sbjct: 279 LWASGNPEKPWDWRR 293
>11_01_0058 +
438000-438230,438847-438902,440003-440117,440314-440424,
442331-442518,442957-443013,443109-443268,443368-443436,
443580-443699
Length = 368
Score = 28.7 bits (61), Expect = 5.8
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +2
Query: 125 LWRRGPPESPWHWSR 169
LW G PE PW W R
Sbjct: 341 LWASGNPEKPWDWRR 355
>10_08_0106 + 14842748-14843085,14843122-14843250,14844145-14844211,
14847177-14847324,14847998-14848097,14848306-14848384,
14848527-14848687,14848829-14848908,14849319-14849475,
14849575-14849723,14849909-14850076,14850426-14850719,
14851002-14851046,14851213-14851462,14851707-14851835,
14852799-14853039,14853977-14854642
Length = 1066
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 99 KSRHQRGRGCGGEDHRSHPGTGRDHRR 179
+SR +RG G G H +H G G RR
Sbjct: 1040 RSRERRGGGSDGNHHHNHGGGGGHKRR 1066
>05_01_0570 + 5061600-5062142,5062790-5062972
Length = 241
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +3
Query: 60 NTRVSDGQRSTVPKSRHQRGRGCGGEDHRSHPGTGRDHRRPKHQSTT 200
+ R +R+T +SR GRG G R G RRP+ + TT
Sbjct: 135 SARPRQRRRATRARSRLSAGRGDGVGGARGRAVRGSARRRPRKEETT 181
>02_04_0411 + 22670418-22670499,22670708-22671045
Length = 139
Score = 28.7 bits (61), Expect = 5.8
Identities = 18/43 (41%), Positives = 18/43 (41%)
Frame = -3
Query: 174 GGRDQCQGDSGGPLLHNRVLVGVCSWGQYCADRRLPWC*RSRF 46
GG D GD GGP H R G C G Y DR C F
Sbjct: 96 GGGDD--GDCGGPCEHRRCEYGCCE-GGYGGDRGHRCCDHGEF 135
>01_05_0612 - 23652121-23652400,23653031-23654427
Length = 558
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = -3
Query: 531 GSTFANSGGVVHNVNRII--IHPNYNRRTADSD 439
G T A S ++R++ +HPN NR+T DSD
Sbjct: 64 GITVAFSAAAPPAISRLLFALHPNKNRQTTDSD 96
>10_08_0108 + 14860469-14861032
Length = 187
Score = 28.3 bits (60), Expect = 7.6
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +2
Query: 95 PQEQTPTRTRLWRRGPPESPWHWSR 169
P+ P R R WRR +PWH R
Sbjct: 23 PRTTLPLRCRRWRRRRRLAPWHGGR 47
>06_03_0739 + 24004629-24005219
Length = 196
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -3
Query: 582 AAHCPYGDATGRWRIRVGSTFANSGGVVHNVNRIIIH 472
AAH PY + R+ + G +GG + RII H
Sbjct: 160 AAHTPYSECPSRFAVADGEGRVYAGGYAWSPRRIIRH 196
>05_04_0069 - 17639386-17641380
Length = 664
Score = 28.3 bits (60), Expect = 7.6
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = -3
Query: 594 SILSAAHCPYGDATGRWRIRVGSTFANSGGVVHNV---NRIIIHPNYNRRTADSDLCILR 424
S L AAH +GDA G W + S GV NV N ++ N + R D+ L ++R
Sbjct: 90 SALIAAHASHGDAEGAWGL---LERMRSDGVEPNVITWNGLVSGLNRSGRARDAVLALVR 146
>02_04_0343 -
22166148-22166318,22166422-22166465,22166563-22166626,
22166729-22167109,22167296-22167475,22167661-22167790,
22167844-22167946,22168060-22168093,22168216-22168300,
22168389-22168453,22168592-22168690,22168960-22169025,
22169200-22169439
Length = 553
Score = 28.3 bits (60), Expect = 7.6
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = -3
Query: 354 GDNQVVWAAGWGATSLGGSNSEQLRHVQV-WTINQNACVQRYRPINRAITANMLCSGV 184
GD + AAGW A S + E+ R +Q ++ +A +R I R A M+ G+
Sbjct: 7 GDREGKSAAGWTALSTTKTTLEEKRRLQANGSVGGDAGTSGFRRIVRLFFACMVAGGI 64
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.131 0.382
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,513,260
Number of Sequences: 37544
Number of extensions: 603431
Number of successful extensions: 1951
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1950
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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