Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV1a09r
(799 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132902-1|CAB81996.1| 246|Caenorhabditis elegans Hypothetical ... 268 2e-72
AL110500-6|CAB60429.1| 629|Caenorhabditis elegans Hypothetical ... 29 5.1
AL023847-1|CAA19545.1| 364|Caenorhabditis elegans Hypothetical ... 29 5.1
AF099919-13|AAC68798.1| 636|Caenorhabditis elegans Hypothetical... 29 5.1
Z74030-19|CAA98449.2| 841|Caenorhabditis elegans Hypothetical p... 28 6.7
Z72508-10|CAA96644.2| 841|Caenorhabditis elegans Hypothetical p... 28 6.7
Z81068-6|CAB02986.1| 725|Caenorhabditis elegans Hypothetical pr... 28 8.9
AF078787-7|AAC26954.2| 518|Caenorhabditis elegans Vegf (vascula... 28 8.9
>AL132902-1|CAB81996.1| 246|Caenorhabditis elegans Hypothetical
protein Y71A12B.1 protein.
Length = 246
Score = 268 bits (658), Expect = 2e-72
Identities = 134/223 (60%), Positives = 159/223 (71%)
Frame = -2
Query: 759 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 580
M+LN +YPATG QK FEV +E KLR+F+EKRM EV D LGDEWKGYV+R+ GGNDKQG
Sbjct: 1 MRLNFAYPATGLQKSFEVDEEKKLRLFFEKRMSQEVAIDALGDEWKGYVVRIGGGNDKQG 60
Query: 579 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 400
FPMKQG+LTN RVRLL+ KG SCYR R++GERKRKSVRGCIVDAN+S L+LVIV+KG E
Sbjct: 61 FPMKQGILTNGRVRLLLKKGQSCYRERKNGERKRKSVRGCIVDANMSALSLVIVKKGDGE 120
Query: 399 IPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKI 220
I GLTD +PR+LGPKRASKIRKLFNL+K DDV +YV+ +G + APKI
Sbjct: 121 IEGLTDSVLPRKLGPKRASKIRKLFNLTKHDDVTKYVITHDKTFPDG----VTKTIAPKI 176
Query: 219 QRLVTPVVLQXXXXXXXXXXXXXXXXKSSEAEYAKLLAQRKKE 91
QRL+TP + + A Y KLLA+ KE
Sbjct: 177 QRLITPARIARKKYLLRQKRNQKIKMRDDAAAYHKLLAKYSKE 219
>AL110500-6|CAB60429.1| 629|Caenorhabditis elegans Hypothetical
protein Y87G2A.6 protein.
Length = 629
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +3
Query: 645 QPLLRRPCAFRKRYEACARPPLRTTSGIPLPGTKRLTS*LRSIPSNVSHEK 797
+P+ + P +KR E PP P K + LRSIPS+ +EK
Sbjct: 2 EPVFKEPSPKKKRVE---NPPENAPDAPKKPQLKHESEFLRSIPSSSQYEK 49
>AL023847-1|CAA19545.1| 364|Caenorhabditis elegans Hypothetical
protein Y57A10C.3 protein.
Length = 364
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +1
Query: 55 PAFDLFLATHLGFLLSLCKQFSIFSLRGLALSETLLLQSETMTSTL 192
P F ++ +G L+++C Q SIFS+ L + + +L ++ L
Sbjct: 70 PFFGIWFELIIGKLITMCYQLSIFSIGNLEIRKFYVLWTDDSNKML 115
>AF099919-13|AAC68798.1| 636|Caenorhabditis elegans Hypothetical
protein F40G9.1 protein.
Length = 636
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = -2
Query: 741 YPATGCQKLFEVVDEHK---LRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQ 583
Y G ++FE+ E K RIF EK + + ++ ++ L++ G NDK+
Sbjct: 6 YLHVGLNRIFEIAKEKKNGKFRIFLEKNVKNVIFLQEIFEKSLFLCLKINGSNDKK 61
>Z74030-19|CAA98449.2| 841|Caenorhabditis elegans Hypothetical
protein F28H7.10a protein.
Length = 841
Score = 28.3 bits (60), Expect = 6.7
Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
Frame = +1
Query: 67 LFLATHLGFLLSLCKQFSIFSLR-GLALSETLLL-----QSETMTSTLQNYRGD*PLDLR 228
L+L + LGF+ C + LR A +E L ET ++ NY +D +
Sbjct: 428 LWLRSLLGFIFFYCCFVCAYMLRPSSATTEHLTRGRINDDGETESTNSTNYLQWHAIDTQ 487
Query: 229 CLMSGFSIFFSFLGWEHAFDDITTYIIFFAKVEQLTDFG 345
C + +S + + GW +I T I+ ++ L DFG
Sbjct: 488 CHLMYYSAWPWYHGWFRLGCEIMTIIVMLFQI--LLDFG 524
>Z72508-10|CAA96644.2| 841|Caenorhabditis elegans Hypothetical
protein F28H7.10a protein.
Length = 841
Score = 28.3 bits (60), Expect = 6.7
Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
Frame = +1
Query: 67 LFLATHLGFLLSLCKQFSIFSLR-GLALSETLLL-----QSETMTSTLQNYRGD*PLDLR 228
L+L + LGF+ C + LR A +E L ET ++ NY +D +
Sbjct: 428 LWLRSLLGFIFFYCCFVCAYMLRPSSATTEHLTRGRINDDGETESTNSTNYLQWHAIDTQ 487
Query: 229 CLMSGFSIFFSFLGWEHAFDDITTYIIFFAKVEQLTDFG 345
C + +S + + GW +I T I+ ++ L DFG
Sbjct: 488 CHLMYYSAWPWYHGWFRLGCEIMTIIVMLFQI--LLDFG 524
>Z81068-6|CAB02986.1| 725|Caenorhabditis elegans Hypothetical
protein F25H5.5 protein.
Length = 725
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -3
Query: 344 PKSVSCSTLAKKMMYVVMSSNACSQPRKEKKMLNPDIRHLRS 219
PKS+ S KK + MS+ + + +KM D HL++
Sbjct: 105 PKSLLTSETLKKKLQASMSAKRRKEQEQRRKMYEEDNEHLKA 146
>AF078787-7|AAC26954.2| 518|Caenorhabditis elegans Vegf (vascular
endothelial growthfactor) receptor family protein 2
protein.
Length = 518
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -2
Query: 726 CQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQ 583
C K F+ + ++ E+++ E E Q D W G LR G DK+
Sbjct: 272 CVKFFKNYMQEEVVQNIERKLQFEREEQQELDSWTGKSLRAEGVEDKE 319
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,986,708
Number of Sequences: 27780
Number of extensions: 378538
Number of successful extensions: 1076
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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