Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1a08r
         (817 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo...    27   4.2  
SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S...    27   4.2  
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi...    26   7.4  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    25   9.7  

>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
           Pik3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 801

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -1

Query: 250 FFXILPSFCKRSFXDLRKKNNILMNI 173
           F+    S+C  +F  LRK +N+++N+
Sbjct: 708 FYQQFKSYCYTTFTALRKSSNLILNL 733


>SPBC336.05c |||S-adenosylmethionine-
           dependentmethyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 378

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 330 FYPPXHLRRXXKYFXIIE 383
           FYPP H++R  K F I++
Sbjct: 6   FYPPLHVQRRRKLFKILQ 23


>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -3

Query: 104 ILGKVRFLSYFLYMY 60
           ILGKV  + YF YMY
Sbjct: 531 ILGKVSIIIYFFYMY 545


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 268 IYYLLPATSSAWNSY 312
           I+YL+P TS  W +Y
Sbjct: 315 IFYLIPGTSKNWEAY 329


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,515,806
Number of Sequences: 5004
Number of extensions: 42258
Number of successful extensions: 94
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)