Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1a08f
         (721 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    29   0.029
EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    23   1.9  
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    21   7.6  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    21   7.6  

>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 29.5 bits (63), Expect = 0.029
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 120 IILIPVQINTLFITILKNPNNFKIGFDNY 206
           I L+P +  T +I +    +NF+IGF+NY
Sbjct: 303 ICLLPFRALTFWIIVAPAGSNFEIGFENY 331


>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
           protein.
          Length = 493

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 214 KNL*LSKPILKLFGFFNIVMNNVFIWTGINIIF 116
           KN+   KP L    F+N+V+    I+  I  I+
Sbjct: 27  KNVPTDKPFLFFGSFYNLVIRKEHIFERIRTIY 59


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 716 DYKKNGHKTRPTSYLFAKILT 654
           D + +GHK R    LF+K  T
Sbjct: 32  DQQASGHKKRKRRVLFSKAQT 52


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 11/42 (26%), Positives = 16/42 (38%)
 Frame = +3

Query: 594 AKDHLLTFEKRIILL*IYVNCKNFSKQITRWPCFMTVFFIIL 719
           +++HL    +   L  I     NF      WP    +FF  L
Sbjct: 190 SRNHLFLVRRTETLAQILNQTVNFYNSAFGWPIAFLIFFATL 231


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,996
Number of Sequences: 336
Number of extensions: 3442
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19155320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)