Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1a08f
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S...    28   1.5  
SPAC13G6.13 ||SPAC24B11.02|sequence orphan|Schizosaccharomyces p...    27   3.6  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    26   4.7  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    26   6.2  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    25   8.2  
SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   8.2  

>SPBC336.05c |||S-adenosylmethionine-
           dependentmethyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 378

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -2

Query: 495 AKFYPPLHLRRK*KYF*IIE 436
           + FYPPLH++R+ K F I++
Sbjct: 4   SSFYPPLHVQRRRKLFKILQ 23


>SPAC13G6.13 ||SPAC24B11.02|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 115

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = +3

Query: 45  LTITFFMLNKFVLXKSIFCEGVFIKIILIPVQINTLFITILKNPNNFKI 191
           L  TFFM+ ++ L   ++ +  +IKII+  V +      I++   + K+
Sbjct: 55  LKCTFFMIEEWHLLAILYDKSKYIKIIICSVLLKLNTTVIIRRNTHTKV 103


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +2

Query: 209 IFLNISKISSSDLDVXKT 262
           + LNIS +SS+DL++ KT
Sbjct: 775 LHLNISSVSSTDLEIWKT 792


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1564

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +2

Query: 512 YSTRTKSRAEDSK*YFLKFFFCILPLFCKRSFIDLR 619
           +ST +  RA+ +K + +  F  +  L C R F++L+
Sbjct: 834 FSTISSPRAKAAKMWLISSFCAMKTLICLRGFLNLK 869


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 551 IYYLLPATSSAWNSY 507
           I+YL+P TS  W +Y
Sbjct: 315 IFYLIPGTSKNWEAY 329


>SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 255

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -3

Query: 263 WSCXHQDLMMISWRYSEKSIIVKAYLEIIWVFQY 162
           W+C     ++ S  +S    +V AYL  IW+  +
Sbjct: 215 WNCFIPYSILFSMNWSAMFQVVGAYLSQIWIITF 248


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,799,720
Number of Sequences: 5004
Number of extensions: 57296
Number of successful extensions: 139
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)