Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1a04r
         (526 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0444 + 10340927-10341063,10341157-10341241,10341480-103415...    29   2.3  
12_02_1153 + 26524232-26524474,26524563-26524694                       29   3.0  
01_06_0100 - 26424769-26425545,26425666-26425697,26425778-264258...    28   5.3  
05_01_0029 + 187769-188707,188971-189246,189978-190174,190263-19...    27   9.2  

>02_02_0444 +
           10340927-10341063,10341157-10341241,10341480-10341537,
           10343738-10345885,10345943-10346388
          Length = 957

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +1

Query: 343 DNGGGHDWLSDSTTVG 390
           D GGG DWL D  TVG
Sbjct: 870 DGGGGGDWLYDGATVG 885



 Score = 28.7 bits (61), Expect = 3.0
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = +1

Query: 343 DNGGGHDWLSDSTTVGKREIDDFGCENGLGGVGD 444
           D GGG DWL D  TVG         +  L G GD
Sbjct: 830 DEGGGGDWLYDGGTVGGLYGGGEAVDGVLDGGGD 863



 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = +1

Query: 343 DNGGGHDWLSDSTTVGKREIDDFGCENGLGGVGD 444
           D GGG  WL D  TVG  +        GL G G+
Sbjct: 460 DEGGGGGWLYDGATVGGLDEGGGVVGGGLDGGGE 493



 Score = 27.9 bits (59), Expect = 5.3
 Identities = 27/79 (34%), Positives = 31/79 (39%)
 Frame = +1

Query: 196 GDNNGVGFDFIGLVNNDGLRNDSSISSWLVHVHNDLNERSGLAWCDWSNDNGGGHDWLSD 375
           GD  G G D  G V   GL ++     WL           G        D GGG  WL D
Sbjct: 588 GDVVGGGLDGGGEVLGGGL-DEGGGGGWLYDGATVGGLDGGGDVVGGGLDGGGG--WLYD 644

Query: 376 STTVGKREIDDFGCENGLG 432
             TVG   +D+ GC  G G
Sbjct: 645 GATVG--GLDEGGCVEGGG 661



 Score = 27.5 bits (58), Expect = 7.0
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = +1

Query: 343 DNGGGHDWLSDSTTVGKREIDDFGCENGLGGVGD 444
           D GGG  WL D  TVG  +        GL G G+
Sbjct: 128 DEGGGGGWLYDGATVGGLDGGGDVVGGGLDGGGE 161



 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +1

Query: 343 DNGGGHDWLSDSTTVGKREIDDFGCENG 426
           D GGG  WL D  TVG   +D+ GC  G
Sbjct: 703 DGGGG--WLYDGATVG--GVDEGGCVEG 726


>12_02_1153 + 26524232-26524474,26524563-26524694
          Length = 124

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
 Frame = +1

Query: 175 GAFFSLFGDNNGVGFDFIGLVNN-DGLRNDSSISSWLVHVHNDLNERSGLAWCDWSNDNG 351
           GA   + GD +G G   +GL  +  G R + S  S          ER  LAW   ++ +G
Sbjct: 2   GAAIVVSGDESGGGSS-LGLGGSITGTRENRSTQSG-----RGRWERRRLAWAAGASGSG 55

Query: 352 GGHDWLSDSTTVGKREIDDFG---CENGLGGVGD 444
           G  D   D+   G  + DD G   C +   G+GD
Sbjct: 56  GSRD--DDNDVSGGDDDDDGGGGDCNDDAVGIGD 87


>01_06_0100 -
           26424769-26425545,26425666-26425697,26425778-26425894,
           26426067-26426118,26426229-26426281,26426883-26427585
          Length = 577

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = +1

Query: 346 NGGGHD---WLSDSTTVGKREIDDFGCENGLGGVGDS 447
           N G +D   W++D   VG   +DD G ++    +GD+
Sbjct: 541 NPGDYDDEGWITDEDMVGGIALDDLGLDSSSSDIGDA 577


>05_01_0029 + 187769-188707,188971-189246,189978-190174,190263-190404,
            190584-190862,190941-191013,191331-191379,192169-192433,
            192576-192631,192777-192845,193028-193139,193682-193771,
            193955-194125,194449-194506,194970-195128,195379-195401
          Length = 985

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -1

Query: 496  VFKNEILRCFRCYRSCG-CRQPHQAHFRTRNHRFP 395
            ++ ++ + C+RCYR+ G    PH  +FR   +  P
Sbjct: 896  MYPDDSVVCYRCYRNQGDSASPHGRNFRKGGNNNP 930


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,635,713
Number of Sequences: 37544
Number of extensions: 227689
Number of successful extensions: 696
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)