Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1a02r
         (805 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560...   257   6e-69
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706...   256   2e-68
12_01_0203 + 1520079-1520302,1522346-1522405,1522794-1523016,152...    29   3.3  
10_07_0139 + 13327851-13327880,13327999-13329049,13329089-133296...    29   3.3  
02_01_0295 - 1973115-1973404,1974138-1974663                           29   3.3  
02_05_0956 - 33064104-33066425                                         28   7.6  
10_08_0421 + 17793875-17794536,17794558-17795515,17795689-17796243     28   10.0 
03_02_0670 - 10303538-10303930,10304349-10305444,10305831-10306228     28   10.0 
03_02_0109 + 5671418-5671631,5675610-5675690,5676249-5676340,567...    28   10.0 

>03_03_0207 -
           15455163-15455389,15455623-15455895,15455991-15456099,
           15456186-15456243,15457002-15457066,15457190-15457195
          Length = 245

 Score =  257 bits (630), Expect = 6e-69
 Identities = 133/227 (58%), Positives = 160/227 (70%), Gaps = 4/227 (1%)
 Frame = -3

Query: 764 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 585
           MK N++ P TGCQK  E+ D+ KLR FY+KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 584 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 411
           FPMKQGVLT+ RVRLL+ +G  C+R   RRDGER+RKSVRGCIV  +LSV+ LVIV+KG 
Sbjct: 61  FPMKQGVLTSGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGD 120

Query: 410 QEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKRVLPAKEGKENAKPRHK 237
            ++PGLTD   PR  GPKRASKIRKLFNL+K+DDVR+YV   +R    K GK+ +    K
Sbjct: 121 NDLPGLTDTEKPRMRGPKRASKIRKLFNLAKDDDVRKYVNTYRRTFTTKNGKKVS----K 176

Query: 236 APKIQRLVTPVVLQXXXXXXXXXXXXXXXXKSSEAEYAKLLAQRKKE 96
           APKIQRLVTP+ LQ                KS  AEY KLLAQR KE
Sbjct: 177 APKIQRLVTPLTLQRKRARIAQKKQRIAKKKSEAAEYQKLLAQRLKE 223


>07_03_1309 +
           25669394-25669399,25669520-25669584,25670543-25670600,
           25670683-25670791,25670872-25671144,25671348-25671589
          Length = 250

 Score =  256 bits (627), Expect = 2e-68
 Identities = 133/227 (58%), Positives = 159/227 (70%), Gaps = 4/227 (1%)
 Frame = -3

Query: 764 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 585
           MK N++ P TGCQK  E+ D+ KLR F++KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 584 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 411
           FPMKQGVLT  RVRLL+ +G  C+R   RRDGER+RKSVRGCIV  +LSV+ LVIV+KG 
Sbjct: 61  FPMKQGVLTAGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGE 120

Query: 410 QEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKRVLPAKEGKENAKPRHK 237
            ++PGLTD   PR  GPKRASKIRKLFNLSK+DDVR+YV   +R    K GK+ +    K
Sbjct: 121 NDLPGLTDTEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRTFTTKNGKKVS----K 176

Query: 236 APKIQRLVTPVVLQXXXXXXXXXXXXXXXXKSSEAEYAKLLAQRKKE 96
           APKIQRLVTP+ LQ                KS  AEY KLLAQR KE
Sbjct: 177 APKIQRLVTPLTLQRKRARIADKKKRIAKKKSEAAEYQKLLAQRLKE 223


>12_01_0203 +
           1520079-1520302,1522346-1522405,1522794-1523016,
           1523038-1523434,1523522-1523781,1523866-1524011,
           1524044-1524317,1524501-1525547
          Length = 876

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -3

Query: 803 FFHG*RSTGLTAVMKLNVSYPATGCQKLFEVVDEHKLR 690
           FFHG RSTG++++   N+ + A     L +  + HK R
Sbjct: 446 FFHGERSTGVSSLAPGNIRHLALQVNSLEQCQELHKYR 483


>10_07_0139 +
           13327851-13327880,13327999-13329049,13329089-13329648,
           13329757-13329904,13330935-13331024,13331148-13331208,
           13331301-13331450,13331571-13331629,13332148-13332282,
           13333028-13333119,13333210-13333278
          Length = 814

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 13/53 (24%), Positives = 32/53 (60%)
 Frame = -3

Query: 371 RLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQRLV 213
           ++ PK+A    ++ + + +DD+ R V  + +P+++  + A+   ++PK +R V
Sbjct: 325 KVEPKKAHCSDRISHKTTQDDMERKVPSKYIPSEKKGKTAESCSRSPKRERRV 377


>02_01_0295 - 1973115-1973404,1974138-1974663
          Length = 271

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
 Frame = -3

Query: 527 GHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLT--DGNVPRRLGPKR 354
           G S  +  + G ++    RG +   + S  AL  +  GA   PG       +P R+G  +
Sbjct: 167 GKSIGKGFQGGIKRHNFKRGLMTHGSKSHRALGSI--GAGTTPGRVYKGKKMPGRMGGTK 224

Query: 353 ASKIRKLFNLSKEDDVRRYVVKRVLPAKEG 264
            +KIRKL  +  ++D++  ++K  +P K G
Sbjct: 225 -TKIRKLKIVKIDNDLKVVMIKGAVPGKPG 253


>02_05_0956 - 33064104-33066425
          Length = 773

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +3

Query: 270 LGWEHAFDDITTYIIFFAKV 329
           +G EHA DD++TYII  A V
Sbjct: 23  VGVEHATDDVSTYIIHVAHV 42


>10_08_0421 + 17793875-17794536,17794558-17795515,17795689-17796243
          Length = 724

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 89  GASPGRDQIAGGQLQCVIPRALARVLR 9
           G  PGR+ + GG+   V+P  L + LR
Sbjct: 79  GGGPGRELVRGGEFGDVLPAPLTKPLR 105


>03_02_0670 - 10303538-10303930,10304349-10305444,10305831-10306228
          Length = 628

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = +3

Query: 57  ACDLISSWRRTVGFLLS---LCKQFSIFSLRGLALSETLLL 170
           AC    SW+   G L S    CK+  IF  RGL L   ++L
Sbjct: 187 ACSAPLSWQSMSGSLDSPSFCCKRIQIFEKRGLTLGVVMIL 227


>03_02_0109 +
           5671418-5671631,5675610-5675690,5676249-5676340,
           5676433-5676513,5676594-5676691,5676872-5676953,
           5677050-5677088
          Length = 228

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = +3

Query: 240 MSGFSIFFSFLGWEHAFDDITTYIIFFAKVEQLTDFGSTFGT*TAGYISISQSRNFLGTL 419
           ++GF +FFSFLG    FD     +I    +  L+  G T G  +      ++ +N+ GT+
Sbjct: 104 LTGFGVFFSFLGIIFFFD---KGLIAMGNILFLSGLGLTIGLKSTMQF-FTKPKNYKGTI 159

Query: 420 A 422
           +
Sbjct: 160 S 160


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,382,579
Number of Sequences: 37544
Number of extensions: 483718
Number of successful extensions: 1421
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1415
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)