Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19p24r
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   4.9  
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu...    26   4.9  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    26   6.5  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    26   6.5  
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p...    26   6.5  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
           EF hand and WH2 motif |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = -2

Query: 501 PCSPGSSRQMAKSRPALSRLAPQLTGRSFTSAGSIM 394
           P  PG  + MA  R  +  +APQ TG      G  M
Sbjct: 720 PQMPGMQQPMAPQRTGMQPMAPQRTGMQPQMTGGPM 755



 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 501 PCSPGSSRQMAKSRPALSRLAPQLTG 424
           P  PG  + MA  R  +  +APQ TG
Sbjct: 654 PQMPGMQQPMAPQRTGMQPMAPQRTG 679


>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 381 RLARSTRHTHVAITRLMAKKGA 316
           R+AR TRH HV  T    KKG+
Sbjct: 47  RIARITRHLHVKCTCNSRKKGS 68


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1639

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
 Frame = -1

Query: 382  TPGKIHPSHACC---YYPFDGEERSSAEYEC 299
            TP K  P   CC   + P++  ++S+ +Y C
Sbjct: 1226 TPLKFEPPDGCCPVCFCPYEKSKQSTEDYYC 1256


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = +3

Query: 417 SFSPSAVEPASTAPGGTSPFVENCQANMDGTSTSNWSFRT 536
           S S  A   AS  PG + P V   + N   TS  +W   T
Sbjct: 294 SLSSLASTGASYRPGPSKPLVSRVRDNYANTSYESWPHST 333


>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 466 VPPGAVEAGSTADGEKLYFGRVN 398
           VPP A+ A  + DG  +Y GR N
Sbjct: 396 VPPWAMSACWSPDGNNIYIGRRN 418


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,765,354
Number of Sequences: 5004
Number of extensions: 56832
Number of successful extensions: 163
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)