Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19p24r
         (745 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1619 + 28174991-28175804,28175945-28175968,28176075-281761...    33   0.24 
11_05_0030 - 18487272-18487544                                         31   1.3  
12_02_1217 + 27082452-27083593,27085041-27085158                       29   2.9  
05_02_0108 + 6681656-6681944,6682041-6682183,6682548-6682610           29   2.9  
10_08_0058 + 14521922-14522779                                         29   3.9  
05_01_0041 + 281427-281549,281671-281730,281822-281868,282013-28...    29   3.9  
08_02_0723 - 20422219-20423796                                         28   9.0  
04_04_1330 - 32700333-32700770                                         28   9.0  
02_05_0869 - 32344821-32344916,32345255-32345347,32345418-323455...    28   9.0  

>07_03_1619 +
           28174991-28175804,28175945-28175968,28176075-28176170,
           28176285-28176466,28176623-28176836,28177262-28177499,
           28177709-28177865,28177950-28178246
          Length = 673

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +3

Query: 444 ASTAPGGTSPFVENCQANMDGTSTSNWSFRTS 539
           +STA GG  PF E+C +  DGT   N +++++
Sbjct: 20  SSTAAGGEVPFYEDCPSTADGTYAPNSTYQSN 51


>11_05_0030 - 18487272-18487544
          Length = 90

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/31 (54%), Positives = 18/31 (58%)
 Frame = -1

Query: 481 STNGEVPPGAVEAGSTADGEKLYFGRVNHDG 389
           ST G+ P G  EAGS ADG K   G V  DG
Sbjct: 27  STGGDRPVGGAEAGSLADGRKR--GPVGLDG 55


>12_02_1217 + 27082452-27083593,27085041-27085158
          Length = 419

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -1

Query: 658 VGTDADGDEIYAGRAHHEGDIVPAKVIPTKNACY 557
           VG+DADGD++Y G    E    P    P     Y
Sbjct: 50  VGSDADGDDLYGGELEEEDSPRPPPPRPLSGLFY 83


>05_02_0108 + 6681656-6681944,6682041-6682183,6682548-6682610
          Length = 164

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -2

Query: 462 RPALSRL-APQLTGRSFTSAGSIMTDALRLARSTRHTHVAITRLMAKKGAP 313
           RP L+RL AP      F+S+ S    + RLA  TRH  ++   L +  GAP
Sbjct: 2   RPLLARLFAPTYIAMGFSSSAS--PPSRRLAHLTRHLLLSSGELSSSVGAP 50


>10_08_0058 + 14521922-14522779
          Length = 285

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +3

Query: 408 PK*SFSPSAVEPASTAPGGTSPFVENCQANMDGTSTSNWSFRTSS 542
           P  S  P+A+  ++T P  T P  +   + +D      WS+R+SS
Sbjct: 7   PACSAPPAALGSSTTTPTATPPRAQFTVSLLDELGRPGWSYRSSS 51


>05_01_0041 +
           281427-281549,281671-281730,281822-281868,282013-282089,
           285368-285440,286193-286281,286665-286711,286805-286885,
           287011-287179,287381-287600,287679-287744,288194-288310,
           288591-288628,288935-289032
          Length = 434

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +1

Query: 403 PCRSKASPRQLWSQPRQRRAGLRHLSRT 486
           P R    PR++WS PR R   LRH SR+
Sbjct: 347 PRRRLTPPRRMWSPPR-RPQSLRHRSRS 373


>08_02_0723 - 20422219-20423796
          Length = 525

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
 Frame = +1

Query: 610 GELFPRRSHHR---QHRYRP*GHLVGCCAGLSK 699
           G  FPRR HHR      +R  G  VGC  G  +
Sbjct: 417 GRRFPRRVHHRGASMVSHRADGRFVGCVQGYDR 449


>04_04_1330 - 32700333-32700770
          Length = 145

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 670 GALRVGTDADGDEIYAGRAHHEGD 599
           G+ R G  +DG+E+  GR  HEG+
Sbjct: 20  GSRRRGGGSDGEELGGGRDEHEGE 43


>02_05_0869 -
           32344821-32344916,32345255-32345347,32345418-32345551,
           32345863-32346013,32346337-32346407,32346683-32346828,
           32347172-32347221,32347552-32347628,32347716-32347776,
           32347859-32347912,32347999-32348058,32348491-32348624,
           32349740-32350418
          Length = 601

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 593 NDVTFVVSSSRVDLITVSIGTDP 661
           NDVT  +SSS +D   +SIG  P
Sbjct: 416 NDVTIALSSSNLDKFLMSIGRQP 438


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,631,252
Number of Sequences: 37544
Number of extensions: 414286
Number of successful extensions: 1149
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1149
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)