Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19p24f
(716 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1619 + 28174991-28175804,28175945-28175968,28176075-281761... 33 0.23
11_05_0030 - 18487272-18487544 31 1.2
12_02_1217 + 27082452-27083593,27085041-27085158 29 2.8
05_02_0108 + 6681656-6681944,6682041-6682183,6682548-6682610 29 2.8
10_08_0058 + 14521922-14522779 29 3.7
05_01_0041 + 281427-281549,281671-281730,281822-281868,282013-28... 29 3.7
09_04_0407 + 17345382-17345579,17345711-17346235 29 4.9
09_06_0210 - 21597470-21598093 28 6.4
08_02_0723 - 20422219-20423796 28 8.5
04_04_1330 - 32700333-32700770 28 8.5
02_05_0869 - 32344821-32344916,32345255-32345347,32345418-323455... 28 8.5
02_01_0279 - 1860410-1860508,1861536-1861889,1862660-1862805,186... 28 8.5
>07_03_1619 +
28174991-28175804,28175945-28175968,28176075-28176170,
28176285-28176466,28176623-28176836,28177262-28177499,
28177709-28177865,28177950-28178246
Length = 673
Score = 33.1 bits (72), Expect = 0.23
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -2
Query: 583 ASTAPGGTSPFVENCQANMDGTSTSNWSFRTS 488
+STA GG PF E+C + DGT N +++++
Sbjct: 20 SSTAAGGEVPFYEDCPSTADGTYAPNSTYQSN 51
>11_05_0030 - 18487272-18487544
Length = 90
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/31 (54%), Positives = 18/31 (58%)
Frame = +3
Query: 546 STNGEVPPGAVEAGSTADGEKLYFGRVNHDG 638
ST G+ P G EAGS ADG K G V DG
Sbjct: 27 STGGDRPVGGAEAGSLADGRKR--GPVGLDG 55
>12_02_1217 + 27082452-27083593,27085041-27085158
Length = 419
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +3
Query: 369 VGTDADGDEIYAGRAHHEGDIVPAKVIPTKNACY 470
VG+DADGD++Y G E P P Y
Sbjct: 50 VGSDADGDDLYGGELEEEDSPRPPPPRPLSGLFY 83
>05_02_0108 + 6681656-6681944,6682041-6682183,6682548-6682610
Length = 164
Score = 29.5 bits (63), Expect = 2.8
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 565 RPALSRL-APQLTGRSFTSAGSIMTDALRLARSTRHTHVAITRLMAKKGAP 714
RP L+RL AP F+S+ S + RLA TRH ++ L + GAP
Sbjct: 2 RPLLARLFAPTYIAMGFSSSAS--PPSRRLAHLTRHLLLSSGELSSSVGAP 50
>10_08_0058 + 14521922-14522779
Length = 285
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -2
Query: 619 PK*SFSPSAVEPASTAPGGTSPFVENCQANMDGTSTSNWSFRTSS 485
P S P+A+ ++T P T P + + +D WS+R+SS
Sbjct: 7 PACSAPPAALGSSTTTPTATPPRAQFTVSLLDELGRPGWSYRSSS 51
>05_01_0041 +
281427-281549,281671-281730,281822-281868,282013-282089,
285368-285440,286193-286281,286665-286711,286805-286885,
287011-287179,287381-287600,287679-287744,288194-288310,
288591-288628,288935-289032
Length = 434
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -3
Query: 624 PCRSKASPRQLWSQPRQRRAGLRHLSRT 541
P R PR++WS PR R LRH SR+
Sbjct: 347 PRRRLTPPRRMWSPPR-RPQSLRHRSRS 373
>09_04_0407 + 17345382-17345579,17345711-17346235
Length = 240
Score = 28.7 bits (61), Expect = 4.9
Identities = 18/57 (31%), Positives = 23/57 (40%)
Frame = -1
Query: 704 FFAIKRVIATCV*RVDLARRSASVMIDPAEVKLLPVSCGASLDSAGRDFAICRELPG 534
FF++K + R SA +DP L P D G F +CR LPG
Sbjct: 140 FFSVKSFFSRSTSRGATVASSAFAAVDPPPPLLSPAKWEGLRDCEGWPFGLCR-LPG 195
>09_06_0210 - 21597470-21598093
Length = 207
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +2
Query: 167 PSWCHRLLPNASGVFLSTTSRGGFCASGGRSRSGP*ITRR 286
P W L P + + G CA+GGR R G + RR
Sbjct: 39 PGWPGSLWPASPATGGRRVRKDGACATGGRRRRGRCVRRR 78
>08_02_0723 - 20422219-20423796
Length = 525
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Frame = -3
Query: 417 GELFPRRSHHR---QHRYRP*GHLVGCCAGLSK 328
G FPRR HHR +R G VGC G +
Sbjct: 417 GRRFPRRVHHRGASMVSHRADGRFVGCVQGYDR 449
>04_04_1330 - 32700333-32700770
Length = 145
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 357 GALRVGTDADGDEIYAGRAHHEGD 428
G+ R G +DG+E+ GR HEG+
Sbjct: 20 GSRRRGGGSDGEELGGGRDEHEGE 43
>02_05_0869 -
32344821-32344916,32345255-32345347,32345418-32345551,
32345863-32346013,32346337-32346407,32346683-32346828,
32347172-32347221,32347552-32347628,32347716-32347776,
32347859-32347912,32347999-32348058,32348491-32348624,
32349740-32350418
Length = 601
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1
Query: 434 NDVTFVVSSSRVDLITVSIGTDP 366
NDVT +SSS +D +SIG P
Sbjct: 416 NDVTIALSSSNLDKFLMSIGRQP 438
>02_01_0279 -
1860410-1860508,1861536-1861889,1862660-1862805,
1862885-1862925,1863010-1863173,1863217-1863281,
1863410-1863670,1863754-1863817,1863946-1864006,
1864112-1864473
Length = 538
Score = 27.9 bits (59), Expect = 8.5
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = -3
Query: 339 GLSKRGPNGMCSKVARRSLRVIQGPLRLLPPLAQNPPREVVDKNTPDALGS 187
G+ K G G C+ + RSL + G R +PP N E +DK +LG+
Sbjct: 416 GVYKLGDFG-CATLIDRSLAIEDGDSRYMPPEMLNDKYEHLDKVDIFSLGA 465
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,728,218
Number of Sequences: 37544
Number of extensions: 479664
Number of successful extensions: 1600
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1600
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -