Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19p22f
         (705 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49886-4|CAA90053.1|  137|Caenorhabditis elegans Hypothetical pr...   130   1e-30
U13019-16|AAK84569.1|  311|Caenorhabditis elegans Serpentine rec...    31   0.80 
AL132865-19|CAJ76951.1|  220|Caenorhabditis elegans Hypothetical...    27   9.9  

>Z49886-4|CAA90053.1|  137|Caenorhabditis elegans Hypothetical
           protein C06A1.5 protein.
          Length = 137

 Score =  130 bits (313), Expect = 1e-30
 Identities = 62/85 (72%), Positives = 70/85 (82%)
 Frame = +3

Query: 273 GGGVDKSKRITTRYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKHGKI 452
           G  V  S+ +TT +MTKYERARVLGTRALQIAM APVMVELEGETDPL+IA KELK  +I
Sbjct: 52  GKAVPTSEHVTTPFMTKYERARVLGTRALQIAMGAPVMVELEGETDPLEIARKELKQRRI 111

Query: 453 PIIIRRYLPDHSYEDWSIDELIIID 527
           PII+RRYLPD SYEDW  D+L + D
Sbjct: 112 PIIVRRYLPDGSYEDWPTDQLQLAD 136


>U13019-16|AAK84569.1|  311|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 6 protein.
          Length = 311

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 12/54 (22%), Positives = 26/54 (48%)
 Frame = +1

Query: 97  SFFNRILFF*FYKWQMRSTKPMMVVQIMTTLQKKMITLKKQKNRKKMAIMCNVW 258
           ++  R+ +F    WQ+   +  M V +++ +    I  K Q   +K  ++C +W
Sbjct: 183 NYSRRVNWFGTTAWQLTYMQISMAVTLLSNIVTGAILWKSQNQSRKSRLLCRIW 236


>AL132865-19|CAJ76951.1|  220|Caenorhabditis elegans Hypothetical
           protein Y62E10A.20 protein.
          Length = 220

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 100 NLFKQRFYSYCYEQRINTE 44
           NLF Q FY+ CYE+    E
Sbjct: 58  NLFAQSFYTLCYEKSFTVE 76


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,482,227
Number of Sequences: 27780
Number of extensions: 222661
Number of successful extensions: 480
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)