Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19p20r
(397 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0242 + 15765726-15765965,15766703-15766874,15767056-157672... 29 1.0
05_02_0091 + 6519799-6519918,6520521-6520682,6520732-6520836 28 2.4
04_04_0491 - 25605560-25605684,25605826-25605928,25606026-256075... 28 2.4
02_05_1133 + 34346894-34347121,34347222-34347283,34347373-343474... 28 3.1
08_02_0270 + 15108178-15108587,15108678-15108774,15109445-151094... 27 5.5
12_01_0513 + 4059586-4059620,4060155-4060365,4060470-4060724,406... 27 7.2
11_01_0437 - 3347960-3349246 27 7.2
04_04_0754 + 27803143-27803517,27805441-27806832,27806910-278071... 27 7.2
01_06_1570 + 38312319-38314259 27 7.2
05_02_0152 + 7126802-7127315,7127451-7129190,7130718-7131778 26 9.6
02_02_0097 - 6746934-6747005,6747372-6748325,6748421-6748435,674... 26 9.6
02_01_0722 + 5405550-5405810,5406654-5407399,5407575-5408046,540... 26 9.6
02_01_0256 + 1680240-1680485,1680950-1681024,1681527-1681776,168... 26 9.6
>03_03_0242 +
15765726-15765965,15766703-15766874,15767056-15767209,
15767287-15767350,15767533-15767640,15767817-15767942,
15768037-15768269,15768565-15768787
Length = 439
Score = 29.5 bits (63), Expect = 1.0
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 197 VDGDGLVFVAFLDQCSCRLELQKFPDLVFGETDKLKE 307
VDG G+ L + C ++++ PD++FGE K K+
Sbjct: 7 VDGSGVPLAVLLKRELCNQKVER-PDMLFGEASKSKK 42
>05_02_0091 + 6519799-6519918,6520521-6520682,6520732-6520836
Length = 128
Score = 28.3 bits (60), Expect = 2.4
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2
Query: 210 PSPSTATVQRRQFLSPVCLSTKPSMV 133
PSPS +F SP+CLST+P+ +
Sbjct: 26 PSPSLPVTDFEEF-SPICLSTQPAFL 50
>04_04_0491 - 25605560-25605684,25605826-25605928,25606026-25607592,
25608694-25610198
Length = 1099
Score = 28.3 bits (60), Expect = 2.4
Identities = 19/55 (34%), Positives = 24/55 (43%)
Frame = +2
Query: 113 HWDSRQYTIDGFVERHTGLKNCLLCTVAVDGDGLVFVAFLDQCSCRLELQKFPDL 277
HWD + T D RH + NC T LV + + C C L+L FP L
Sbjct: 896 HWDETEAT-DFPCLRHLTILNCSKLTGLPKLLALVDLR-IKNCECLLDLPSFPSL 948
>02_05_1133 +
34346894-34347121,34347222-34347283,34347373-34347460,
34348005-34348268,34348346-34348586,34348672-34348748,
34348837-34349007,34349084-34349176,34349257-34349406,
34349491-34349577,34349656-34349820,34349900-34350019,
34350244-34350446,34350547-34350696,34350779-34350926,
34351046-34351129,34351207-34351308
Length = 810
Score = 27.9 bits (59), Expect = 3.1
Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = -1
Query: 352 LGKKYTFDREENFDGFLKFVGLPEDQIRKLLQ--FKPTTTLIKEGDKYKTITVDSNGTKE 179
+G + +R +FD + + + K++ + P T + +++ I + G +
Sbjct: 470 VGSNGSKNRYFDFDKLAEITSIVTRNLNKIIDTNYYPVETAKRSNMRHRPIGIGVQGLAD 529
Query: 178 TVFESGVPFDET 143
T G+PFD T
Sbjct: 530 TFILLGMPFDST 541
>08_02_0270 +
15108178-15108587,15108678-15108774,15109445-15109492,
15109583-15109806,15111367-15111463,15111556-15111651,
15112297-15112544,15112632-15112715,15112787-15113236,
15114880-15115024,15115116-15115217,15115677-15115769,
15117308-15117349,15119085-15119113,15119210-15119251,
15119922-15119997,15120764-15120835,15121208-15121326,
15121428-15121491,15121576-15123009
Length = 1323
Score = 27.1 bits (57), Expect = 5.5
Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Frame = -1
Query: 361 MSFLGKKYTFDREENFDGFLKFV---GLPEDQIRKLLQFKPTTTLIKEGDKYKTITVDSN 191
+SF + FD E F K V G + ++K+ + L+ +GD + + +
Sbjct: 28 VSFDVLPFQFDAAEGVASFKKDVYLRGFTDGGLQKVYKQVVAWKLVLDGDSPEIAVLSTE 87
Query: 190 GTKETVFESGVPFDETIDGVLTRIPM 113
G+ + + ++ETI VL + M
Sbjct: 88 GSWIALLKPRPSYEETIRSVLITVEM 113
>12_01_0513 +
4059586-4059620,4060155-4060365,4060470-4060724,
4060801-4060865,4061120-4061194,4061440-4061575,
4061661-4061753,4061838-4061983,4062074-4062174,
4062259-4062434,4063823-4063900,4063991-4064199,
4064286-4064378,4064888-4064971,4065405-4065506,
4065591-4065678,4065756-4065809,4065869-4066075,
4066970-4067026,4067171-4067225,4067737-4067813,
4067941-4068007,4068383-4068444,4068541-4068603,
4068702-4068830
Length = 905
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = -2
Query: 375 WA-TQPCLSWVKNTHSIEKKTSMG 307
WA T PCLSW NT K ++G
Sbjct: 278 WASTIPCLSWQYNTEKTPKVLAVG 301
>11_01_0437 - 3347960-3349246
Length = 428
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +3
Query: 177 VSFVPLLSTVMVLYLSPSLINVVVGLNCKSFRIWSS 284
++F+PLLS++ +L L P+L + + G ++SS
Sbjct: 111 LAFLPLLSSLYLLRLPPALPSSLSGFEAVLLAVYSS 146
>04_04_0754 +
27803143-27803517,27805441-27806832,27806910-27807164,
27807246-27807368,27807643-27808119,27808217-27808603
Length = 1002
Score = 26.6 bits (56), Expect = 7.2
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 75 FGVTVFPFECCCAIGILVNTPSMVSS 152
FG++V C CA+G+ T MV++
Sbjct: 628 FGISVMVIACPCALGLATPTAVMVAT 653
>01_06_1570 + 38312319-38314259
Length = 646
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Frame = +3
Query: 108 CAIGILVNTPSMVSSKGTPDSKT----VSFVPLLSTVMVLYLSPSLI 236
CA+G+ ++TPS SS + + T + +P+ S ++V ++ L+
Sbjct: 222 CALGLALSTPSSSSSPASSSNHTNMAVATAIPVASALLVSVIAALLV 268
>05_02_0152 + 7126802-7127315,7127451-7129190,7130718-7131778
Length = 1104
Score = 26.2 bits (55), Expect = 9.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 198 STVMVLYLSPSLINVVVGLNCKSFRI 275
S ++V SP + N+V NC FRI
Sbjct: 309 SMILVTTRSPDVANLVASNNCNPFRI 334
>02_02_0097 -
6746934-6747005,6747372-6748325,6748421-6748435,
6748592-6748984
Length = 477
Score = 26.2 bits (55), Expect = 9.6
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 299 VCRSPRRPDPETFAVQAYN 243
+ RSPRR P T A +AYN
Sbjct: 330 IIRSPRRGTPTTTAFRAYN 348
>02_01_0722 +
5405550-5405810,5406654-5407399,5407575-5408046,
5408129-5408296,5408301-5408418,5408845-5409056,
5409165-5409287,5409395-5409880,5409976-5410401
Length = 1003
Score = 26.2 bits (55), Expect = 9.6
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 75 FGVTVFPFECCCAIGILVNTPSMVSS 152
FG++V C CA+G+ T MV++
Sbjct: 613 FGISVLVVACPCALGLATPTAVMVAT 638
>02_01_0256 +
1680240-1680485,1680950-1681024,1681527-1681776,
1681910-1681995,1682669-1682771,1683490-1683602,
1684259-1684351
Length = 321
Score = 26.2 bits (55), Expect = 9.6
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 134 TIDGFVERHTGLKNCLLCTVAVDGDGLVFVAFLDQCSCR 250
TID E H +++C C + +D +G +A C C+
Sbjct: 166 TIDANEETHLVIQDCPQCRICLDNEGDDLIA---PCHCK 201
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,155,803
Number of Sequences: 37544
Number of extensions: 231725
Number of successful extensions: 705
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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