Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19p20f
(450 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 29 0.25
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 28 0.76
SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid protease|Schi... 25 5.4
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c... 25 5.4
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 7.1
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 7.1
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 25 7.1
SPAC11D3.18c |||nicotinic acid plasma membrane transporter |Schi... 25 7.1
SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyc... 24 9.4
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 24 9.4
SPBC56F2.14 |mrpl44||mitochondrial ribosomal protein subunit l44... 24 9.4
SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|c... 24 9.4
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ... 24 9.4
SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha... 24 9.4
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 24 9.4
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 29.5 bits (63), Expect = 0.25
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = -2
Query: 164 INVVVGLNCKSFRIWSSGRPTNLRNPSK 81
+N + GLN KS+R+ +S P+NL NP++
Sbjct: 1369 VNTIGGLNPKSYRLITS--PSNLTNPTR 1394
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 27.9 bits (59), Expect = 0.76
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = +1
Query: 37 MSFLGKKYTFDREENFDGFLKFVGLPEDQIRKLLQF--KPTTTLIKEGDKYK-TITVDSN 207
+S G + + + ++G+PEDQ RK F +++L+K+ ++K D
Sbjct: 985 LSIAGNSSLWQARKGLASGISYLGIPEDQKRKTFSFDTSKSSSLLKKLYRFKHDPNPDVA 1044
Query: 208 GTKETVFESGVPFD 249
T ++++ VP D
Sbjct: 1045 KTMGEIWDTLVPSD 1058
>SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid
protease|Schizosaccharomyces pombe|chr 2|||Manual
Length = 298
Score = 25.0 bits (52), Expect = 5.4
Identities = 12/48 (25%), Positives = 25/48 (52%)
Frame = -2
Query: 176 SPSLINVVVGLNCKSFRIWSSGRPTNLRNPSKFSSLSNVYFLPKKDMV 33
S SL+ ++G+N F +W + R ++L + ++ N F+ M+
Sbjct: 76 SRSLVLSIIGINVGVFALWRAPRFSHLNRFLQKYAVMNPIFINMPSMI 123
>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
3|||Manual
Length = 625
Score = 25.0 bits (52), Expect = 5.4
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +2
Query: 11 YVSTWATQPCLSWVKNTHSIEKKTSMGSLSLSVSPKTRSGNFCSSS 148
Y S A+ P S + S+ ++ S S S +RSG+ SSS
Sbjct: 503 YSSASASYPSTSMSASLSSVHTSSATSSSKSSSSSSSRSGSSSSSS 548
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 24.6 bits (51), Expect = 7.1
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +2
Query: 68 IEKKTSMGSLSLSVSPKTRSGNFCSSSLQLH*SRKATNTRPSPSTAT 208
++ KTS S L P+T S ++ H + + P PST+T
Sbjct: 812 VQPKTSQASSILPTVPRTTSYTSPYATTSSHITPADVHPLPPPSTST 858
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 24.6 bits (51), Expect = 7.1
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Frame = +2
Query: 56 NTHSIEKKTSMGSLSLSVSPKTRSGNFCSSSLQLH*SRKATNTRPSPSTA---TVQRRQF 226
++ S +S S S+ ++ T S + SSS S ++++RPS S++ T+ F
Sbjct: 193 SSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSS---SSSSSSSRPSSSSSFITTMSSSTF 249
Query: 227 LSPVCLSTKPS 259
+S V ++ S
Sbjct: 250 ISTVTVTPSSS 260
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 24.6 bits (51), Expect = 7.1
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 68 IEKKTSMGSLSLSVSPKTRSGNFCSSSLQLH 160
++KK + +LSLS SP S F SS H
Sbjct: 650 LDKKKMLETLSLSDSPNPESITFISSKFVDH 680
>SPAC11D3.18c |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 24.6 bits (51), Expect = 7.1
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -2
Query: 278 ILVNTPSMVSSKGTPDSKTVSFVPLLSTVMVLY 180
ILV TPS+V K S+ ++F+ ++ VL+
Sbjct: 110 ILVETPSVVLVKRIKASRMLAFISFAWSMTVLF 142
>SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 475
Score = 24.2 bits (50), Expect = 9.4
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = -3
Query: 355 SHLSAEIVTFSSVSPYSLLNVAVPLGFSSI 266
S LSAE TF S+S N +P+G SSI
Sbjct: 21 SKLSAE-ETFKSLSEILAENSTLPVGISSI 49
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 24.2 bits (50), Expect = 9.4
Identities = 21/73 (28%), Positives = 36/73 (49%)
Frame = +2
Query: 44 SWVKNTHSIEKKTSMGSLSLSVSPKTRSGNFCSSSLQLH*SRKATNTRPSPSTATVQRRQ 223
S + +T S TS SLS S S T S + SSS+ S ++++ P+ +++T+
Sbjct: 238 SSIPSTSSSSSSTS-SSLSSSSSSSTASSSSSSSSIIS--SSSSSSSSPTSTSSTISSSS 294
Query: 224 FLSPVCLSTKPSM 262
S ST ++
Sbjct: 295 SSSSSPTSTSSTI 307
>SPBC56F2.14 |mrpl44||mitochondrial ribosomal protein subunit
l44|Schizosaccharomyces pombe|chr 2|||Manual
Length = 100
Score = 24.2 bits (50), Expect = 9.4
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +2
Query: 50 VKNTHSIEKKTSMGSLSLSVSPKTRSGNFCSSSLQLH*SRKATNTRPS 193
+ N + K + L L+V+ K S + +L + K TN++PS
Sbjct: 11 ILNVNPFSKASQSAKLLLAVASKETSNSLYGLNLITSLASKDTNSKPS 58
>SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 386
Score = 24.2 bits (50), Expect = 9.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 110 RPTNLRNPSKFSSLSNVYFLPKKD 39
RPT+ + SLS+ YFLP K+
Sbjct: 45 RPTHRKGHHHKHSLSHQYFLPPKN 68
>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 314
Score = 24.2 bits (50), Expect = 9.4
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2
Query: 224 TVSFVPLLSTVMVLYLSPSLINVVVGLNCKSFRIWS 117
T FV S V+ + +SP VV G K+ +IW+
Sbjct: 98 THQFVGHTSDVLSVSISPDNRQVVSGSRDKTIKIWN 133
>SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 473
Score = 24.2 bits (50), Expect = 9.4
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +1
Query: 40 SFLGKKYTFDREENFDGFLKFVGLPEDQIRKLLQFKPTTTLIKEGDKYKTI 192
S LG+ YT + G+L G+P+D K F +TL + D++K +
Sbjct: 277 SMLGQ-YTTSEDGKIPGYLDLEGVPKDS--KATTF-AASTLHVDNDRWKGV 323
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 24.2 bits (50), Expect = 9.4
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 179 NTRPSPSTATVQRRQFLSPVCLSTKPSM 262
++RP PS+++ +R Q LS + ++ P M
Sbjct: 470 SSRPKPSSSSRRRSQSLSAMLKTSNPYM 497
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,981,831
Number of Sequences: 5004
Number of extensions: 42394
Number of successful extensions: 164
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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