Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19p20f
         (450 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL022270-1|CAB63432.1| 1270|Caenorhabditis elegans Hypothetical ...    32   0.22 
AF003141-5|AAK21486.1|  136|Caenorhabditis elegans Lipid binding...    32   0.22 
AF003141-3|AAK21484.1|  135|Caenorhabditis elegans Lipid binding...    32   0.22 
U00044-5|AAK93857.1|  174|Caenorhabditis elegans Mesoderm and en...    29   1.2  
AF302238-1|AAG21386.1|  174|Caenorhabditis elegans GATA-type tra...    29   1.2  
Z68320-3|CAA92707.3|  477|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z46676-3|CAA86663.1| 1244|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AC024771-9|ABA61863.1|  137|Caenorhabditis elegans Lipid binding...    28   2.7  
AC024771-8|AAK70656.1|  152|Caenorhabditis elegans Lipid binding...    28   2.7  
AL110482-4|CAB60337.1|  371|Caenorhabditis elegans Hypothetical ...    28   3.6  
Z92808-1|CAB07266.2|  606|Caenorhabditis elegans Hypothetical pr...    27   4.8  
Z81476-3|CAB03922.3|  592|Caenorhabditis elegans Hypothetical pr...    27   4.8  
AL117199-4|CAN99722.1| 1342|Caenorhabditis elegans Hypothetical ...    27   8.3  
AL117195-32|CAB60770.3| 1342|Caenorhabditis elegans Hypothetical...    27   8.3  
AC006696-3|AAF39984.1|  391|Caenorhabditis elegans Hypothetical ...    27   8.3  

>AL022270-1|CAB63432.1| 1270|Caenorhabditis elegans Hypothetical
           protein C26G2.1 protein.
          Length = 1270

 Score = 31.9 bits (69), Expect = 0.22
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +1

Query: 130 KLLQFKPTTTLIKEGDKYK-TITVDSNGTKETVF--ESGVPFDETIDGVLTR 276
           K+L   P T ++ EGD +K  +TV  N         ++GVPFD TI  V  R
Sbjct: 691 KMLVNDPVTVVMSEGDSFKENLTVRGNPAISLWQWRKNGVPFDHTIGRVFAR 742


>AF003141-5|AAK21486.1|  136|Caenorhabditis elegans Lipid binding
           protein protein 5 protein.
          Length = 136

 Score = 31.9 bits (69), Expect = 0.22
 Identities = 21/71 (29%), Positives = 33/71 (46%)
 Frame = +1

Query: 43  FLGKKYTFDREENFDGFLKFVGLPEDQIRKLLQFKPTTTLIKEGDKYKTITVDSNGTKET 222
           F+G+ +     ENF+ +LK VG+     +     KPT  +   G+K+    + +      
Sbjct: 6   FVGR-WKLVESENFEDYLKEVGVGLLLRKAACAAKPTLEIKVNGNKWHVNQLSTFKNTTL 64

Query: 223 VFESGVPFDET 255
            F  GV FDET
Sbjct: 65  EFTLGVEFDET 75


>AF003141-3|AAK21484.1|  135|Caenorhabditis elegans Lipid binding
           protein protein 6 protein.
          Length = 135

 Score = 31.9 bits (69), Expect = 0.22
 Identities = 20/74 (27%), Positives = 34/74 (45%)
 Frame = +1

Query: 34  TMSFLGKKYTFDREENFDGFLKFVGLPEDQIRKLLQFKPTTTLIKEGDKYKTITVDSNGT 213
           +  F+G+ +     ENF+ ++K VG+     +     KPT  +  EGD + +    +   
Sbjct: 2   SQEFVGR-WKLIHSENFEEYMKEVGVGLITRKAAANLKPTLEIKVEGDLWYSNQYSTFKN 60

Query: 214 KETVFESGVPFDET 255
               F+ G  FDET
Sbjct: 61  TTLSFKLGQEFDET 74


>U00044-5|AAK93857.1|  174|Caenorhabditis elegans Mesoderm and
           endoderm determinationprotein 2 protein.
          Length = 174

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 20/51 (39%), Positives = 28/51 (54%)
 Frame = +2

Query: 56  NTHSIEKKTSMGSLSLSVSPKTRSGNFCSSSLQLH*SRKATNTRPSPSTAT 208
           NT++    T+M S SL++SP T S N    +   H S  +T    SPST+T
Sbjct: 51  NTYASYYPTAMDSSSLNISPTTGSPNSSHFTTFTHFSTPST----SPSTST 97


>AF302238-1|AAG21386.1|  174|Caenorhabditis elegans GATA-type
           transcription factor protein.
          Length = 174

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 20/51 (39%), Positives = 28/51 (54%)
 Frame = +2

Query: 56  NTHSIEKKTSMGSLSLSVSPKTRSGNFCSSSLQLH*SRKATNTRPSPSTAT 208
           NT++    T+M S SL++SP T S N    +   H S  +T    SPST+T
Sbjct: 51  NTYASYYPTAMDSSSLNISPTTGSPNSSHFTTFTHFSTPST----SPSTST 97


>Z68320-3|CAA92707.3|  477|Caenorhabditis elegans Hypothetical
           protein W07A12.6 protein.
          Length = 477

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
 Frame = -2

Query: 269 NTPSMVSSKGTPDSKTVSFVPLLS-TVMVLYLSPSLINVVVGLNCK-SFRIWSSGRPTNL 96
           NT S ++S   PD+ TV+  PL++ T +V+  S +  N++  L+ K S +   +GR + L
Sbjct: 8   NTTSCLTSTLLPDTVTVAATPLIAWTALVILGSITSNNILSALSLKRSIKELLTGRSSKL 67


>Z46676-3|CAA86663.1| 1244|Caenorhabditis elegans Hypothetical
           protein C08B11.3 protein.
          Length = 1244

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 16/63 (25%), Positives = 30/63 (47%)
 Frame = +1

Query: 34  TMSFLGKKYTFDREENFDGFLKFVGLPEDQIRKLLQFKPTTTLIKEGDKYKTITVDSNGT 213
           TM+ +GK++    + NF  F    G+P D +   L  +     I E D++ T   ++   
Sbjct: 229 TMADMGKEWKRTTKHNFRDFWASSGVPLDMLMTFLDREIEAEYIDEDDQFFTGVSETFNV 288

Query: 214 KET 222
           K++
Sbjct: 289 KDS 291


>AC024771-9|ABA61863.1|  137|Caenorhabditis elegans Lipid binding
           protein protein 9,isoform b protein.
          Length = 137

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
 Frame = +1

Query: 55  KYTFDREENFDGFLKFVGLPEDQIRKLLQFKPTTTLIKEGDKYKTITVDSNGTKETV--- 225
           K+ F   ENFD +LK VG+         + KP       GD++   T++SN T +     
Sbjct: 10  KWNFVSSENFDEYLKEVGVGWAIRTIATKTKPALEFAVNGDEW---TMNSNSTFKNYTLK 66

Query: 226 FESGVPFDE-TIDG 264
           ++ G   DE T DG
Sbjct: 67  WKLGTASDEKTADG 80


>AC024771-8|AAK70656.1|  152|Caenorhabditis elegans Lipid binding
           protein protein 9,isoform a protein.
          Length = 152

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
 Frame = +1

Query: 55  KYTFDREENFDGFLKFVGLPEDQIRKLLQFKPTTTLIKEGDKYKTITVDSNGTKETV--- 225
           K+ F   ENFD +LK VG+         + KP       GD++   T++SN T +     
Sbjct: 25  KWNFVSSENFDEYLKEVGVGWAIRTIATKTKPALEFAVNGDEW---TMNSNSTFKNYTLK 81

Query: 226 FESGVPFDE-TIDG 264
           ++ G   DE T DG
Sbjct: 82  WKLGTASDEKTADG 95


>AL110482-4|CAB60337.1|  371|Caenorhabditis elegans Hypothetical
           protein Y39G8B.3 protein.
          Length = 371

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -1

Query: 144 ELQKFPDLVFGETDKLKEPIEVFFSIECVF 55
           EL KFP ++   ++ +   + V+F+I CVF
Sbjct: 25  ELLKFPSIILLVSEFMMFVVTVYFAIRCVF 54


>Z92808-1|CAB07266.2|  606|Caenorhabditis elegans Hypothetical
           protein M04C3.2 protein.
          Length = 606

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
 Frame = +3

Query: 237 CAFRRNHRWCIDENP--NGTATF--KREYGDT 320
           C     +RWC+ ENP     A F  ++EYG++
Sbjct: 373 CQLHAEYRWCLTENPTQQKLARFMNRKEYGES 404


>Z81476-3|CAB03922.3|  592|Caenorhabditis elegans Hypothetical
           protein C25F9.4 protein.
          Length = 592

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
 Frame = +3

Query: 237 CAFRRNHRWCIDENP--NGTATF--KREYGDT 320
           C     +RWC+ ENP     A F  ++EYG++
Sbjct: 372 CQLHAEYRWCLTENPTQQKLARFMNRKEYGES 403


>AL117199-4|CAN99722.1| 1342|Caenorhabditis elegans Hypothetical
            protein Y57A10A.1 protein.
          Length = 1342

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 93   EPIEVFFSIECVFFTQERHGCVAQVET*KK 4
            EP+ + FS + V +TQ  +G V Q E  KK
Sbjct: 1160 EPMSLTFSNDNVAYTQAEYGFVEQFENIKK 1189


>AL117195-32|CAB60770.3| 1342|Caenorhabditis elegans Hypothetical
            protein Y57A10A.1 protein.
          Length = 1342

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 93   EPIEVFFSIECVFFTQERHGCVAQVET*KK 4
            EP+ + FS + V +TQ  +G V Q E  KK
Sbjct: 1160 EPMSLTFSNDNVAYTQAEYGFVEQFENIKK 1189


>AC006696-3|AAF39984.1|  391|Caenorhabditis elegans Hypothetical
           protein W08E12.7 protein.
          Length = 391

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 18/68 (26%), Positives = 31/68 (45%)
 Frame = -2

Query: 443 FKKNSNCIWKLKM*INRIYLNFVVSIGNAVPFIGRDSNF*FGVTVFPFECCCAIGILVNT 264
           F+KN    ++LKM  +R++ + V  +   +PF  R         +   E C   G+LV  
Sbjct: 258 FRKNEQVSYQLKMKASRVFFSDVNKVHGPMPFSLRSFEEEVKAKMGVVE-CEKYGLLVPY 316

Query: 263 PSMVSSKG 240
           P +   +G
Sbjct: 317 PVLYEKEG 324


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,874,929
Number of Sequences: 27780
Number of extensions: 235087
Number of successful extensions: 884
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)