Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19p20f
         (450 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    46   1e-07
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    46   1e-07
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    39   3e-05
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          26   0.22 
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   1.2  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   1.2  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   6.2  

>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 46.4 bits (105), Expect = 1e-07
 Identities = 25/86 (29%), Positives = 44/86 (51%)
 Frame = +1

Query: 55  KYTFDREENFDGFLKFVGLPEDQIRKLLQFKPTTTLIKEGDKYKTITVDSNGTKETVFES 234
           K+ F  + NF+ F K +G  ++ +  +LQ +P+  L K GD++   +   + T    F+ 
Sbjct: 5   KFQFVSQNNFEEFAKVLG-DQNLVNTVLQPRPSFELSKNGDEWTFTSSSGDNTYTKTFKM 63

Query: 235 GVPFDETIDGVLTRIPMAQQHSKGNT 312
            VPF+ET+  +  R        +GNT
Sbjct: 64  NVPFEETLPSLPDRKFQTVTSIEGNT 89


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 46.4 bits (105), Expect = 1e-07
 Identities = 25/86 (29%), Positives = 44/86 (51%)
 Frame = +1

Query: 55  KYTFDREENFDGFLKFVGLPEDQIRKLLQFKPTTTLIKEGDKYKTITVDSNGTKETVFES 234
           K+ F  + NF+ F K +G  ++ +  +LQ +P+  L K GD++   +   + T    F+ 
Sbjct: 7   KFQFVSQNNFEEFAKVLG-DQNLVNTVLQPRPSFELSKNGDEWTFTSSSGDNTYTKTFKM 65

Query: 235 GVPFDETIDGVLTRIPMAQQHSKGNT 312
            VPF+ET+  +  R        +GNT
Sbjct: 66  NVPFEETLPSLPDRKFQTVTSIEGNT 91


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 38.7 bits (86), Expect = 3e-05
 Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
 Frame = +1

Query: 43  FLGKKYTFDREENFDGFLKFVGLPEDQIRKLLQFKPTTTLIKEGDKYKTITVDSNGTKET 222
           FLGK+Y     ENFD F+K +G+     +      P   L +    Y   T       E 
Sbjct: 4   FLGKRYKLYSSENFDDFMKALGVGIMTRKVGSSVSPVVELTENNGLYTLKTTSPFKNTEI 63

Query: 223 VFESGVPF-DETIDG 264
            F+ G  F +ET+DG
Sbjct: 64  KFKLGEEFEEETVDG 78



 Score = 24.6 bits (51), Expect = 0.50
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 294 TFKREYGDTELKVTISADKWDGVAYRYYKV 383
           T +RE+  TE+K  +  D  D +  R YK+
Sbjct: 103 TIEREFSSTEMKAIMKVD--DIICTRVYKI 130


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 25.8 bits (54), Expect = 0.22
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 276 NPNGTATFKREYGDTELKVTISADKWDGVAYRYY 377
           N N ++ + REY D E K+    +  +  AY YY
Sbjct: 203 NTNYSSKYMREYNDPEYKLDYFMEDVELNAYYYY 236


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 276 NPNGTATFKREYGDTELKVTISADKWDGVAYRYY 377
           N N ++   REY D E K+    +  +  AY YY
Sbjct: 203 NTNYSSKNMREYNDPEYKLDYFMEDVELNAYYYY 236


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 216 LCTVAVDGDGLVFVAFLDQCSCRLELQKFP 127
           L  ++ DGD L  +    +  C +EL+ FP
Sbjct: 141 LLRISQDGDILYSMRLTIKAKCPMELRNFP 170


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 102 KLKEPIEVFFSIECVFFTQERHG 34
           K KEP+ VF++ E        HG
Sbjct: 81  KFKEPVAVFYASEIAIGLFFLHG 103


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,905
Number of Sequences: 438
Number of extensions: 3008
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)