Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19p15f
         (761 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.10 |||conserved eukaryotic protein|Schizosaccharomyces po...    27   3.9  
SPAC25B8.02 |||histone deacetylase complex subunit Sds3 |Schizos...    27   3.9  
SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|ch...    27   3.9  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    26   6.7  
SPBC23E6.05 |arx1||ribosomal export complex Arx1 |Schizosaccharo...    26   6.7  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    25   8.9  

>SPBC83.10 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 189

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 200 SLLDINYSSNFIKSNQTFEIFLNKDYENTVPN 295
           +LL  +  +  I SN+TFE  + +D   T PN
Sbjct: 40  NLLSYDTRARLISSNKTFETVVERDGSFTFPN 71


>SPAC25B8.02 |||histone deacetylase complex subunit Sds3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/40 (27%), Positives = 25/40 (62%)
 Frame = +3

Query: 441 KYRVKSIKQVFVKYINEGKSTIRFEEPPYDLCIKSESIQL 560
           +YR K++K++ + ++NE K  I   +  +D+  +S ++ L
Sbjct: 95  EYRCKTLKEMVLSHLNEKKRKIYEAKDMFDIGSESSTLLL 134


>SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 440

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +3

Query: 522 PYDLCIKSESIQLKCFMKLLRSCITGDEKAL--HLSPLSSLSVTAKNNAPVKLVISDRSQ 695
           PY +    ES   +CF +     +TG EK +   LS L+S S  ++  A  K +++D   
Sbjct: 9   PYSMTSDPESFGHECFTRRWGIILTGIEKDVSERLSKLASTSKDSEVVAQGKPLLNDLEA 68

Query: 696 F 698
           F
Sbjct: 69  F 69


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2310

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +3

Query: 384 KSETEYFILHFSSLNKTGTKYRVKSIKQVFVKYINEGKSTIRFEEP 521
           K E EYF+L   S +  G  Y   +I   ++  +NE    + +++P
Sbjct: 62  KLENEYFLLRQLSSHPNGRNY---AIAPAYILLLNETLGALIYDDP 104


>SPBC23E6.05 |arx1||ribosomal export complex Arx1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 417

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 454 NLLNKYLLSI*MKENLQLGLRNPHTICV 537
           NLL++Y  SI   +  + G+  P +ICV
Sbjct: 54  NLLHEYKSSIYKSQRFEKGIAEPTSICV 81


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = -2

Query: 655  FLAVTLKLERGERCKAFSSPVIQLRSNFMKHFS 557
            FL  T+ ++  ++ +A +  + +LRSNF+ + S
Sbjct: 1762 FLCATIDIDDQKKARATALELARLRSNFLANIS 1794


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,922,537
Number of Sequences: 5004
Number of extensions: 60496
Number of successful extensions: 171
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)