Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19p15f
         (761 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0162 + 17858802-17861168                                         29   3.1  
01_07_0175 - 41715304-41716760,41717200-41717500,41718109-41718369     29   5.3  
06_03_1331 - 29389159-29390300,29390415-29390822,29390930-29391413     28   9.3  
01_06_1071 - 34289609-34292941                                         28   9.3  

>03_04_0162 + 17858802-17861168
          Length = 788

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +3

Query: 303 INRLHSALNLRNNGKYLKSTLALGKEPKSETEYFILHFS 419
           + R  S   L  NG+ +    AL ++P S T Y+ LHFS
Sbjct: 357 VGRSFSTTVLLGNGELVDGQ-ALAQQPNSSTSYYPLHFS 394


>01_07_0175 - 41715304-41716760,41717200-41717500,41718109-41718369
          Length = 672

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +3

Query: 528 DLCIKSESIQLKCFMKLLRSCITGDEKALHLSPLSSLSVTAK 653
           +L  +     L  F+K++ S  +G+EKA  +  LS+L VT K
Sbjct: 377 ELAEQIRDTHLNIFVKIISSPTSGNEKAAAIGILSNLPVTDK 418


>06_03_1331 - 29389159-29390300,29390415-29390822,29390930-29391413
          Length = 677

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +3

Query: 528 DLCIKSESIQLKCFMKLLRSCITGDEKAL 614
           D  I+ E ++ + F +L ++C+ GDEK++
Sbjct: 378 DHSIQLEGLESEVFWELFQACVFGDEKSI 406


>01_06_1071 - 34289609-34292941
          Length = 1110

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +3

Query: 684  DRSQFPAKGLPRTLQSLYLS 743
            D + FPA+GLP TLQ L +S
Sbjct: 1007 DINNFPAEGLPHTLQFLEIS 1026


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,863,757
Number of Sequences: 37544
Number of extensions: 285103
Number of successful extensions: 611
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)