Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19p15f
         (761 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41278-3|AAK31512.1|  453|Caenorhabditis elegans Hypothetical pr...    39   0.003
AF101310-4|AAC69214.2|  662|Caenorhabditis elegans Hypothetical ...    28   8.3  

>U41278-3|AAK31512.1|  453|Caenorhabditis elegans Hypothetical
           protein F33G12.4 protein.
          Length = 453

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 36/149 (24%), Positives = 70/149 (46%), Gaps = 8/149 (5%)
 Frame = +3

Query: 276 MKIQCQIEVIN-RLHSALNLRNNGKYLKSTLALGKEPKSETEYFILHFSSLNKTGTKYRV 452
           M++ C++     + ++ +N +   K  K  + L K  ++  +Y I    + +KTG K+ +
Sbjct: 1   MRLPCEVVFARYKANAGVNPKPT-KSQKGFVILQKLRQTPPQYQITVAVAGDKTGNKFEL 59

Query: 453 KSIKQVFVKYINEGKSTIRFE-EPPYDLCI-KSESIQLKCFMKLLRSCITGD----EKA- 611
                +  K+I +GK+TI F+  P   +CI K+    L   ++ +R  + G+    EK  
Sbjct: 60  NKPPIILDKFIAQGKTTITFQTTPAVMVCISKANPEALAQLIEAIRKIVKGENVDIEKVK 119

Query: 612 LHLSPLSSLSVTAKNNAPVKLVISDRSQF 698
           +  S     ++T  N A  K  +   S+F
Sbjct: 120 VKSSDFKPTTITVNNQATYKKQMQSCSEF 148


>AF101310-4|AAC69214.2|  662|Caenorhabditis elegans Hypothetical
           protein C39F7.5 protein.
          Length = 662

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 31/124 (25%), Positives = 54/124 (43%)
 Frame = +3

Query: 372 GKEPKSETEYFILHFSSLNKTGTKYRVKSIKQVFVKYINEGKSTIRFEEPPYDLCIKSES 551
           GK  +  +E F +  SSL        ++S+    +   NEG ST R +       + SE 
Sbjct: 223 GKNTEENSESFKIRCSSLIAASRSKIIRSLLLRKLTEKNEGSSTSRPKR-----IVFSEL 277

Query: 552 IQLKCFMKLLRSCITGDEKALHLSPLSSLSVTAKNNAPVKLVISDRSQFPAKGLPRTLQS 731
           I  + F  +  S +  D     L+P S  S+++ + A     I++  + P   L R LQ 
Sbjct: 278 IFPQAFAPIFVSFLYTDRLDWSLAPKSEDSISSLSQAK---AITNSGRTPDLQLARALQL 334

Query: 732 LYLS 743
           + ++
Sbjct: 335 IEIA 338


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,534,031
Number of Sequences: 27780
Number of extensions: 313037
Number of successful extensions: 849
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)