Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19p14r
(877 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0786 - 7606984-7607037,7607235-7607379,7608103-7608163,760... 31 0.92
08_02_0590 + 19044193-19044364,19044464-19045047,19045085-190460... 31 1.2
08_02_0593 + 19078264-19078609,19078724-19082256 30 2.8
04_03_0811 - 19909128-19912214 30 2.8
12_02_0304 + 17112677-17113195 29 4.9
12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649 29 6.5
07_03_0951 - 22836167-22836358,22836455-22837213 29 6.5
03_01_0014 + 113638-113754,113836-113950,114570-114835,115365-11... 29 6.5
02_02_0549 + 11410129-11412180 29 6.5
03_06_0203 - 32337928-32338025,32338745-32338820,32338905-323389... 28 8.5
>08_01_0786 -
7606984-7607037,7607235-7607379,7608103-7608163,
7608273-7608465
Length = 150
Score = 31.5 bits (68), Expect = 0.92
Identities = 18/42 (42%), Positives = 22/42 (52%)
Frame = +3
Query: 594 ERVLVSKEAPQIEVLPFVSAITSPARWG*APALAAEPPTILV 719
E + AP LPF S + + AR G APAL+A P LV
Sbjct: 2 EATAAAAAAPARSALPFRSRVAAAARPGRAPALSAAPGRRLV 43
>08_02_0590 +
19044193-19044364,19044464-19045047,19045085-19046059,
19046219-19046605
Length = 705
Score = 31.1 bits (67), Expect = 1.2
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = -1
Query: 775 GIPRAESLKRAEEAADFDGTRIVGGSAANAGA-HPHLAGLVIALTNGRTSICGASLLTNT 599
G RA ++ AAD GT G+ NA A + A V+ + +GR S+ +L +
Sbjct: 20 GAERAGAVVAPPRAADAAGTGT--GTGRNAVAVNGGAAEDVVVIASGRRSVGEPTLDVSE 77
Query: 598 RSVTAAHCWRSRDAQ 554
+ AA WRSR Q
Sbjct: 78 MLLQAAETWRSRRTQ 92
>08_02_0593 + 19078264-19078609,19078724-19082256
Length = 1292
Score = 29.9 bits (64), Expect = 2.8
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = -1
Query: 775 GIPRAESLKRAEEAADF--DGTRIVGGSAANAGAHPHLAGLVIALTNGRTSICGASLLTN 602
G R S R E+AA + +V G +A +GA A +GR S+ G +L +
Sbjct: 73 GTSRGGSGARREDAAGTGRNAVAVVAGGSATSGAERVAA----RAEDGRRSMDGPTLELS 128
Query: 601 TRSVTAAHCWRSRDAQ 554
+ AA WRSR Q
Sbjct: 129 EMMLHAAQPWRSRCTQ 144
>04_03_0811 - 19909128-19912214
Length = 1028
Score = 29.9 bits (64), Expect = 2.8
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +1
Query: 598 GCWSVRKLRRLKFCHS*VRSQVQQDGGEHQRWRQ 699
GCWS+R+L L+ HS SQ + GE WR+
Sbjct: 962 GCWSLRRLPLLRQEHS---SQAVEVSGERAWWRK 992
>12_02_0304 + 17112677-17113195
Length = 172
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -2
Query: 558 PRLVSSPSLLAQLTSSPEAPGSPPPV 481
PR SPS+ A+ T +P SPPPV
Sbjct: 42 PRRAPSPSVTAEPTPAPVIAPSPPPV 67
>12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649
Length = 461
Score = 28.7 bits (61), Expect = 6.5
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -1
Query: 625 CGASLLTNTRSVTAAHCWRSR 563
CG+ ++T TRSVT A C S+
Sbjct: 275 CGSRIITTTRSVTVASCCSSQ 295
>07_03_0951 - 22836167-22836358,22836455-22837213
Length = 316
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -3
Query: 299 SQQPTKTPSQPSGHY*RRLRPDFWK 225
S PT TPSQPS Y RR R + W+
Sbjct: 63 SPPPTPTPSQPSSSYHRR-RRESWE 86
>03_01_0014 +
113638-113754,113836-113950,114570-114835,115365-115575,
115915-115979,118723-118930,119457-119566,119663-119913,
120250-120356,120442-120509,120624-120701,121070-121198,
121341-121481,122297-122344,122648-122743,124071-124183,
124441-124591,124745-124818,124913-125072,125356-125454,
125532-125618,125761-125907
Length = 946
Score = 28.7 bits (61), Expect = 6.5
Identities = 11/39 (28%), Positives = 15/39 (38%)
Frame = +1
Query: 277 GVFVGCWLPKQHRKFCRSRQPRPKYQQSCCFHWLG*CAE 393
G + G + + RK+ P CC HW C E
Sbjct: 149 GTYTGIFRQELQRKYHLKNSPCDPCMVHCCLHWCANCQE 187
>02_02_0549 + 11410129-11412180
Length = 683
Score = 28.7 bits (61), Expect = 6.5
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = -1
Query: 538 LAFGTANIFSGGTRVTTSSVHMHGSYNMNNLHN-DVAVINHNHVGFNNNIQRINLASGSN 362
LA +F+G V ++S H+ + ++ + N D IN+NHVG N N +LAS N
Sbjct: 129 LANNYMGLFNGTGSVGSASNHLF-AVELDTIQNPDFRDINNNHVGININ----DLASRDN 183
Query: 361 N 359
+
Sbjct: 184 D 184
>03_06_0203 -
32337928-32338025,32338745-32338820,32338905-32338971,
32339181-32339275,32340062-32340151,32340293-32340340,
32340764-32341069
Length = 259
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 558 PRLVSSPSLLAQLTSSPEAPGSPPP 484
PRLVSSP+ L + P+ P P P
Sbjct: 49 PRLVSSPAKLTDDATPPQPPPQPQP 73
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,320,732
Number of Sequences: 37544
Number of extensions: 439425
Number of successful extensions: 1860
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1858
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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