Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19p09r
         (856 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    27   3.4  
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    26   5.9  
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy...    26   5.9  
SPBC365.02c |cox10||protoheme IX farnesyltransferase|Schizosacch...    26   7.8  

>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -1

Query: 598 TAREVGQTQNPTIRVAGGGIGFNNVNLEARNARGRGFSYNVQIW 467
           +   VG+  N  +R+A G  G   VN+E R+ +      NV ++
Sbjct: 366 SGNSVGEDTNALVRIATGSAGEMYVNVETRSIQSENIG-NVSLY 408


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = +2

Query: 491 SSAARVSGLKIDVVEADAATSDPDSRVLGLPHFPGRDGRYANAGGHSDPVEVRLRTRRRW 670
           +SAA + GL+      +     P   ++GLP+   ++ R    GG  D  E    + R+W
Sbjct: 810 ASAASI-GLEAGQDSTNTYNQAPLDLLMGLPYITMKNYRNVFYGGVKDIQEASETSERKW 868

Query: 671 S 673
           S
Sbjct: 869 S 869


>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 478

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
 Frame = -2

Query: 693 YARFVSIDQRRLVRSLTSTGSLWPPAFAYLPSRPG--KWGKPRTRLSGSLVAASASTTSI 520
           ++RF S+    ++   T  G++    FAYL  R    KW K ++ LS +    S      
Sbjct: 25  FSRFGSVSNLEIINKSTPVGTI--QRFAYLNFRTDEDKWQKCKSYLSNATFKGSKLRIEE 82

Query: 519 LRP 511
            RP
Sbjct: 83  ARP 85


>SPBC365.02c |cox10||protoheme IX
           farnesyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 387

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -1

Query: 847 PGRLLQVGKMKFTLLFVLVIVTAVAADEEAGVRSNGRPDLVIGT 716
           P   L++GK + T+L VL  +++ A     G+  N    L +GT
Sbjct: 84  PSAFLELGKPRLTVLVVLSTMSSYALAPYPGLSFNTLAWLTMGT 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,600,203
Number of Sequences: 5004
Number of extensions: 78141
Number of successful extensions: 187
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)