Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19p06r
         (857 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase Gmh1|Schizosa...    28   1.5  
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    27   3.4  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     27   3.4  
SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|...    27   3.4  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    26   7.9  

>SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase
           Gmh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 600 SSLIVPQLWGPAPSLLST 653
           SSL+VP +WG  P++L T
Sbjct: 129 SSLVVPPVWGKMPAILQT 146


>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1028

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 28/95 (29%), Positives = 39/95 (41%), Gaps = 7/95 (7%)
 Frame = +1

Query: 286  SRPDRIPRQFPHHHHGHLPS--CVPTEPGFSTGSSLHPH---LPSSN--CTAERCVARCV 444
            S+  RIP   P+  +G      CV T P     S+L PH   L +SN    AE       
Sbjct: 849  SKSGRIPTGSPYIMNGQWRKDLCVSTPPMVDINSALFPHWFKLSASNLFAGAEHAGLNRQ 908

Query: 445  KPCIHRVSTHAVLPQRALHVQFQALVHRQRRLQEP 549
            KP    +  +  LP+ +  V  +  V R  R + P
Sbjct: 909  KPDKIDLDLYEPLPENSYLVAAELRVLRALRHKNP 943


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +2

Query: 542 RSLLFSSFTLRTGFVQLVEIVLDCAPVVGTCALPLV 649
           RSL++SSF +   FV ++    +C  ++G  ++ L+
Sbjct: 539 RSLIYSSFWILNPFVAIISTRGNCEAILGILSIALL 574


>SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -2

Query: 664 GVKSVDKREGAGPHNWGTIKDDLDELNKXXXXXXXXXEKAPEAGAG 527
           G +++ +RE A     G + D+L E +K           AP++ AG
Sbjct: 56  GPRAMKRREKAEKEKLGVVNDELAESSKPSSGAATPTRSAPKSSAG 101


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 340  PSCVPTEPGFSTGSSLHPHLPSSNCTA 420
            PS  P+ PG+ST  +  P  PS + T+
Sbjct: 1556 PSYSPSSPGYSTSPAYMPSSPSYSPTS 1582


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,514,734
Number of Sequences: 5004
Number of extensions: 40921
Number of successful extensions: 115
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)