Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19p06r
         (857 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016672-7|AAB66119.1|  378|Caenorhabditis elegans Vig (drosophi...    62   6e-10
U64844-8|AAB18308.1|  330|Caenorhabditis elegans Serpentine rece...    34   0.11 
Z68314-7|CAA92662.2|  872|Caenorhabditis elegans Hypothetical pr...    31   1.4  
AC025716-10|AAK39607.1|  474|Caenorhabditis elegans Hypothetical...    31   1.4  
U41104-6|AAK77633.2|  419|Caenorhabditis elegans Hypothetical pr...    30   1.8  
L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle position...    30   2.4  
AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane...    30   2.4  
Z81560-2|CAB04547.1| 1021|Caenorhabditis elegans Hypothetical pr...    29   5.6  
Z81118-4|CAB03327.1|  309|Caenorhabditis elegans Hypothetical pr...    29   5.6  
AF003139-10|AAB54160.3|  294|Caenorhabditis elegans Hypothetical...    28   7.4  
Z81540-5|CAB04405.2|  946|Caenorhabditis elegans Hypothetical pr...    28   9.8  
Z75711-6|CAB00037.3|  387|Caenorhabditis elegans Hypothetical pr...    28   9.8  
Z48783-4|CAA88698.1|  359|Caenorhabditis elegans Hypothetical pr...    28   9.8  
U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (gr...    28   9.8  
AL132951-7|CAD89753.2|  608|Caenorhabditis elegans Hypothetical ...    28   9.8  
AL110485-27|CAB60369.3|  515|Caenorhabditis elegans Hypothetical...    28   9.8  
AF036689-1|AAB88320.1|  186|Caenorhabditis elegans Hypothetical ...    28   9.8  

>AF016672-7|AAB66119.1|  378|Caenorhabditis elegans Vig (drosophila
           vasa intronic gene)ortholog protein 1, isoform a
           protein.
          Length = 378

 Score = 61.7 bits (143), Expect = 6e-10
 Identities = 39/104 (37%), Positives = 54/104 (51%)
 Frame = -2

Query: 700 REFDRRSGSDKTGVKSVDKREGAGPHNWGTIKDDLDELNKXXXXXXXXXEKAPEAGAGDG 521
           R+FDR+SGSD+TGV+S DK++G G  NWG  KD+L    +          + PE    + 
Sbjct: 178 RQFDRQSGSDRTGVRSFDKKDGHGKGNWGDQKDELAGETENIAPEGAESTE-PEV-PREK 235

Query: 520 QXXXXXXXXXXXXXXXELTLDEYKALRNAQRTAPQYNLRKAGEG 389
                           + TL E+KA   A+  AP++N RKAGEG
Sbjct: 236 TAEELAYEAELAVLAKQKTLKEFKAA--AKADAPKFNTRKAGEG 277


>U64844-8|AAB18308.1|  330|Caenorhabditis elegans Serpentine
           receptor, class h protein213 protein.
          Length = 330

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 25/76 (32%), Positives = 36/76 (47%)
 Frame = +2

Query: 260 LLATHALWIVGQIVFLVSFLIITTVTFLLAFQQNQVFPLAQVFTLTCLPQIVLRSGALRV 439
           L+ T   W V +  + ++  I+ TV F  A+Q      LA+ F ++  P I L   A   
Sbjct: 126 LIPTSKCWRVFRTPWFITHFIVATVFFFPAYQMIPDQQLAKNFVISIAPCIPLYVNA--- 182

Query: 440 A*SLVFIECQLTRFFL 487
              LVF+    TRFFL
Sbjct: 183 --DLVFVMLLETRFFL 196


>Z68314-7|CAA92662.2|  872|Caenorhabditis elegans Hypothetical
           protein F07H5.8 protein.
          Length = 872

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +1

Query: 346 CVPTEPGFSTGSSLHPHLPSSNCTAERCVARCVKPCIHR-VSTHAVLPQR 492
           CV  +P FS   ++    PS++ ++ +C+ +C   C  + + T+ +  Q+
Sbjct: 494 CVAAQPNFSVQINMIDETPSTSTSSPQCIPQCQPSCDQQCIQTYKIQVQQ 543


>AC025716-10|AAK39607.1|  474|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.7 protein.
          Length = 474

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/49 (32%), Positives = 19/49 (38%)
 Frame = +1

Query: 247 CPTNASGDPRAVDSRPDRIPRQFPHHHHGHLPSCVPTEPGFSTGSSLHP 393
           CP  +S         P +I   F H  H   PSC+PT  G      L P
Sbjct: 91  CPKPSSESAFPFPISPTQIDLPFGHTAHDRKPSCLPTPRGSPNSPRLTP 139


>U41104-6|AAK77633.2|  419|Caenorhabditis elegans Hypothetical
           protein T12C9.7 protein.
          Length = 419

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 11/48 (22%), Positives = 24/48 (50%)
 Frame = +1

Query: 571 QNRFCSTRRDRP*LCPSCGDLRPPSCRLISHRFCQSRIFGRTHVCLYC 714
           + + C+ +R  P L P+C +L+P   ++        +  G +++  YC
Sbjct: 49  EKKQCTKKRQLPSLAPACEELQPKKSKVTEETVASQKTHGLSNLDDYC 96


>L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle positioning
            protein 4 protein.
          Length = 2104

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 385  LHPHLPSSNCTAERCVARCVKPCIHRVSTHA 477
            L+P  P  NC + R V  C KP ++  S HA
Sbjct: 1655 LNPSRPGRNCLSYRGVNECEKPELNECSPHA 1685


>AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane
            matrix receptor MUP-4 protein.
          Length = 2104

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 385  LHPHLPSSNCTAERCVARCVKPCIHRVSTHA 477
            L+P  P  NC + R V  C KP ++  S HA
Sbjct: 1655 LNPSRPGRNCLSYRGVNECEKPELNECSPHA 1685


>Z81560-2|CAB04547.1| 1021|Caenorhabditis elegans Hypothetical
           protein K02E2.2 protein.
          Length = 1021

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 46  THCESS*ERGNPCCRRPSAASRGD 117
           THCE     GN CC  P A++  D
Sbjct: 253 THCEKERRDGNKCCSGPLASTMRD 276


>Z81118-4|CAB03327.1|  309|Caenorhabditis elegans Hypothetical
           protein T10G3.4 protein.
          Length = 309

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 20/60 (33%), Positives = 33/60 (55%)
 Frame = +2

Query: 446 SLVFIECQLTRFFLSGHCTFSFRHLSIASAGFRSLLFSSFTLRTGFVQLVEIVLDCAPVV 625
           S+    C +  FF++ H TF+ RH S+ +  ++ L  +   LRT FV  V +V +C  V+
Sbjct: 160 SICICICLVILFFVNRHLTFNSRHKSVLTVRYQ-LAENVKALRT-FVPFV-VVDNCLSVL 216


>AF003139-10|AAB54160.3|  294|Caenorhabditis elegans Hypothetical
           protein F53G12.4 protein.
          Length = 294

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 612 VPQLWGPAPSLLSTDFTPVLSEP-DLRSNSRLPLLS 716
           +P  WGP+ S L TD     S+P     N+ LP LS
Sbjct: 168 IPNAWGPSKSALVTDDVASTSDPLPAIFNAHLPPLS 203


>Z81540-5|CAB04405.2|  946|Caenorhabditis elegans Hypothetical
           protein F46B3.5 protein.
          Length = 946

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +1

Query: 46  THCESS*ERGNPCCRRPSAASRGD 117
           THCES    GN CC    AA+  D
Sbjct: 269 THCESGKRDGNKCCDARLAATMRD 292


>Z75711-6|CAB00037.3|  387|Caenorhabditis elegans Hypothetical
           protein K02B12.8 protein.
          Length = 387

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
 Frame = +1

Query: 613 CPSCGDLRPPSCRLIS---HRFCQSRIFGRTHVCLYCQKN 723
           C  C + +PP    IS   H FC         VCL C+KN
Sbjct: 6   CNKCFNRKPPDGFFISSCFHIFCTKCAKADLAVCLICKKN 45


>Z48783-4|CAA88698.1|  359|Caenorhabditis elegans Hypothetical
           protein F33H1.3 protein.
          Length = 359

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 265 GDPRAVDSRPDRIPRQFPHHHHGHLP 342
           G P + +S P R+P    HHHH H P
Sbjct: 233 GPPSSYNSMPTRMP----HHHHHHHP 254


>U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (grd
           related) protein 6 protein.
          Length = 240

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
 Frame = +1

Query: 289 RPDRIPRQFPHHHHGHLPSCVPTEPGFSTGSSLHPHLPSSNCTAER-CVARCVKPCIHRV 465
           RP   P   P ++   +P  +PT  G   G+     +PS    A+  C   C  PC ++ 
Sbjct: 99  RPSFYPSYVPQYYQPMMPQPMPTAGGCGGGAV----VPSVRIPAQNDCCCGCSSPCKYKS 154

Query: 466 STHAVLPQRAL 498
              A    + +
Sbjct: 155 VRRAAFAAKTI 165


>AL132951-7|CAD89753.2|  608|Caenorhabditis elegans Hypothetical
           protein Y67H2A.10 protein.
          Length = 608

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 310 QFPHHHHGHLPSCVPTEPGFSTGS 381
           Q  HHHH  +P+  P EP  S+G+
Sbjct: 214 QQQHHHHQQIPTSAP-EPSVSSGT 236


>AL110485-27|CAB60369.3|  515|Caenorhabditis elegans Hypothetical
           protein Y46G5A.26a protein.
          Length = 515

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 275 ALWIVGQIVFLVSFLIITTVTFLLAFQQNQVFP 373
           +LW+  +  F     II T+TFLL F  N+V P
Sbjct: 307 SLWMENETSFQDMISIILTITFLL-FSYNEVMP 338


>AF036689-1|AAB88320.1|  186|Caenorhabditis elegans Hypothetical
           protein C50A2.3 protein.
          Length = 186

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +1

Query: 286 SRPDRIPRQFPHHHHGHLPSCVPTEPGFSTGSSLHPHLPSSNC 414
           +RP  + RQF + HH   P+  P    +         LPSS C
Sbjct: 119 ARPMSMNRQFQNQHHLSTPTVQPLNIQYLYPPRYEATLPSSEC 161


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,359,381
Number of Sequences: 27780
Number of extensions: 255037
Number of successful extensions: 979
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)