Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19p04r
(854 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0322 - 2589074-2589121,2589214-2589296,2589414-2589492,258... 285 4e-77
09_06_0079 - 20732041-20732097,20732219-20732301,20732661-207328... 279 2e-75
01_06_1301 + 36122797-36122838,36122958-36123033,36123145-361232... 270 1e-72
03_05_1169 + 30892888-30892916,30894786-30894822,30895091-308951... 44 2e-04
02_03_0230 + 16620856-16620991,16622157-16622239,16632090-166321... 31 1.2
01_06_0627 - 30705604-30706977 29 3.6
09_02_0088 + 4136698-4136857,4137530-4137558,4137992-4138954,413... 28 8.3
08_02_0546 - 18474217-18475133,18475207-18475396,18475870-184763... 28 8.3
01_06_0192 + 27347369-27348826,27349124-27349264,27349350-273510... 28 8.3
>01_01_0322 -
2589074-2589121,2589214-2589296,2589414-2589492,
2589622-2589716,2590198-2590330,2590601-2590685,
2591040-2591163,2591297-2591372,2594305-2594319
Length = 245
Score = 285 bits (698), Expect = 4e-77
Identities = 134/233 (57%), Positives = 175/233 (75%), Gaps = 2/233 (0%)
Frame = -1
Query: 839 TKNQINEIVNNLKKGPLDPN--VDVIVGVPAIYLSYVKTIIPDNVEVAAQNCWKSPKGAF 666
T +Q+++IV L +G + V+V+V P ++L VK+ + ++VAAQNCW GAF
Sbjct: 8 TTDQVDKIVKILNEGQIASTDVVEVVVSPPYVFLPVVKSQLRPEIQVAAQNCWVKKGGAF 67
Query: 665 TGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESGLKVIACIGETLEER 486
TGE+S M+ ++ + WVILGHSERR++ GE +E V +KVA+AL GLKVIAC+GETLE+R
Sbjct: 68 TGEVSAEMLVNLSIPWVILGHSERRSLLGESNEFVGDKVAYALSQGLKVIACVGETLEQR 127
Query: 485 ESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWAIGTGKTATPQQAQDVHHALRNWLS 306
ESG T +VV Q KA+ I D W N+V+AYEPVWAIGTGK ATP QAQ+VH LR WL+
Sbjct: 128 ESGSTMDVVAAQTKAISERIKD-WTNVVVAYEPVWAIGTGKVATPDQAQEVHDGLRKWLA 186
Query: 305 ANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGFLVGGASLKPEFVEIVNA 147
ANVS V+++ RI YGGSVT AN KELA+ D+DGFLVGGASLKPEF++I+N+
Sbjct: 187 ANVSAEVAESTRIIYGGSVTGANCKELAAKPDVDGFLVGGASLKPEFIDIINS 239
>09_06_0079 -
20732041-20732097,20732219-20732301,20732661-20732834,
20732927-20733059,20733226-20733310,20733527-20733650,
20733835-20733904,20734643-20734669,20734788-20734949
Length = 304
Score = 279 bits (685), Expect = 2e-75
Identities = 130/232 (56%), Positives = 169/232 (72%), Gaps = 1/232 (0%)
Frame = -1
Query: 839 TKNQINEIVNNLKKGPLDPNVDVIVGVPAIYLSYVKTIIPDNVEVAAQNCWKSPKGAFTG 660
TK+ ++++V L L+P+VDV+V P IY+ VK + D +EV+AQN W GA+TG
Sbjct: 66 TKDSVSKLVTELNAATLEPDVDVVVAPPFIYIDQVKNSLTDRIEVSAQNVWIGKGGAYTG 125
Query: 659 EISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESGLKVIACIGETLEERES 480
EIS + D+G WVILGHSERR + GE D+ + +K A+AL +KVIACIGE LEERE+
Sbjct: 126 EISAEQLVDIGCQWVILGHSERRHVIGEDDQFIGKKAAYALSQNVKVIACIGELLEEREA 185
Query: 479 GKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWAIGTGKTATPQQAQDVHHALRNWLSAN 300
GKT +V F+Q+KA +I W ++V+AYEPVWAIGTGK ATP+QAQ+VH A+R+WL N
Sbjct: 186 GKTFDVCFKQMKAFADSI-TNWADVVIAYEPVWAIGTGKVATPEQAQEVHAAVRDWLKTN 244
Query: 299 VSGSVSDAVRIQYGGSVTAANAKELASCKDIDGFLVGGASLK-PEFVEIVNA 147
VS V+ +RI YGGSV AAN ELA +DIDGFLVGGASLK P+F I+N+
Sbjct: 245 VSPEVASGIRIIYGGSVNAANCAELAKKEDIDGFLVGGASLKGPDFATIINS 296
>01_06_1301 +
36122797-36122838,36122958-36123033,36123145-36123268,
36123675-36123759,36124076-36124208,36124712-36124806,
36124982-36125060,36125205-36125287,36125505-36125555
Length = 255
Score = 270 bits (661), Expect = 1e-72
Identities = 132/233 (56%), Positives = 166/233 (71%), Gaps = 2/233 (0%)
Frame = -1
Query: 839 TKNQINEIVNNLKKG--PLDPNVDVIVGVPAIYLSYVKTIIPDNVEVAAQNCWKSPKGAF 666
T + +IV L + P + V+V+V P ++L VK ++ + VAAQNCW GAF
Sbjct: 17 TGEDVKKIVTVLNEAEVPSEDVVEVVVSPPFVFLPQVKGLLRPDFSVAAQNCWVRKGGAF 76
Query: 665 TGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESGLKVIACIGETLEER 486
TGEIS M+ ++ V WVILGHSERR + GE + VA+K+A+AL G+KVIACIGETLE+R
Sbjct: 77 TGEISAEMLVNLQVPWVILGHSERRALMGESSDFVADKIAYALSQGIKVIACIGETLEQR 136
Query: 485 ESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWAIGTGKTATPQQAQDVHHALRNWLS 306
E+G T EVV Q KA+ I D W N+VLAYEPVWAIGTGK ATP QAQ+VH LR WL
Sbjct: 137 EAGTTMEVVAAQTKAIAEKISD-WTNVVLAYEPVWAIGTGKVATPAQAQEVHDGLRKWLV 195
Query: 305 ANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGFLVGGASLKPEFVEIVNA 147
NVS +V+++ RI Y GSV AN KELA+ D+DGFLVGGASLKPEFV+I+ +
Sbjct: 196 TNVSPAVAESTRIIYRGSVNGANCKELAAKPDVDGFLVGGASLKPEFVDIIKS 248
>03_05_1169 +
30892888-30892916,30894786-30894822,30895091-30895146,
30895192-30895306,30896063-30896127,30896218-30896299,
30896420-30896479
Length = 147
Score = 43.6 bits (98), Expect = 2e-04
Identities = 27/56 (48%), Positives = 33/56 (58%)
Frame = -1
Query: 341 QDVHHALRNWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGFLVGGASLK 174
Q VH LR L+ NV ++ R S TA+N KELA D++GFLV GASLK
Sbjct: 78 QTVHGGLRKLLTTNVRIHMNHLCR-----SCTASNCKELAVQPDLNGFLVSGASLK 128
>02_03_0230 +
16620856-16620991,16622157-16622239,16632090-16632149,
16632795-16632903,16633285-16633337,16633503-16633559,
16633730-16633846
Length = 204
Score = 31.1 bits (67), Expect = 1.2
Identities = 22/64 (34%), Positives = 34/64 (53%)
Frame = -1
Query: 584 FGEKDELVAEKVAHALESGLKVIACIGETLEERESGKTEEVVFRQLKALVSAIGDKWENI 405
F E+ EL VA ES L + +T EE ++ K ++ F + +ALV+A +N+
Sbjct: 142 FIERAELKQMMVATLAESDLNLT---DQTFEEADTNKDGKIDFEEWQALVNAHPCLLKNM 198
Query: 404 VLAY 393
LAY
Sbjct: 199 TLAY 202
>01_06_0627 - 30705604-30706977
Length = 457
Score = 29.5 bits (63), Expect = 3.6
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = -1
Query: 389 PVWAIGTGKTATPQQAQDVHHALRNWLSANVSGSVSDAVRIQYG--GSVTAANAKELA 222
PV+ +G + ++ V HA WL A + SV V + +G GS +AA KE+A
Sbjct: 223 PVYCVGPLVASGEEEGGGVRHACLAWLDAQPARSV---VFLCFGSMGSFSAAQLKEIA 277
>09_02_0088 +
4136698-4136857,4137530-4137558,4137992-4138954,
4138973-4139301,4139398-4139485,4139766-4139864,
4139935-4140245,4140532-4140685
Length = 710
Score = 28.3 bits (60), Expect = 8.3
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Frame = -1
Query: 320 RNWLSANV----SGSVSDAVRIQYGGSVT-AANAKELASCKDIDGFLVGGASLKPEFVEI 156
+NW + + SG + VR+ YGGSV +N+ + + GG KP F E+
Sbjct: 49 KNWQNGEIVGGHSGKMDRLVRLHYGGSVVEQSNSGSNFEGMSVKQLIFGG---KPSFEEL 105
Query: 155 V 153
V
Sbjct: 106 V 106
>08_02_0546 -
18474217-18475133,18475207-18475396,18475870-18476313,
18476629-18477495,18478858-18479367
Length = 975
Score = 28.3 bits (60), Expect = 8.3
Identities = 34/150 (22%), Positives = 59/150 (39%), Gaps = 1/150 (0%)
Frame = -1
Query: 830 QINEIVNNLKKGPLDPNVDVIVGVPAIYLSYV-KTIIPDNVEVAAQNCWKSPKGAFTGEI 654
Q+ E+V + K DV++ + + K ++ + +A N S +G + +
Sbjct: 357 QLTEVVKDAKTTKDPDYCDVLISTINSIMGWTEKRLLAYHETFSASNI-DSMQGIVSIGV 415
Query: 653 SPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESGLKVIACIGETLEERESGK 474
S A I ++ H R E D +V K+ + S L+ + +EE +S +
Sbjct: 416 STAKILAEDIS-----HEYHRKRKQETDVVVHSKIETYIRSSLRT--AFAQKMEEADSKR 468
Query: 473 TEEVVFRQLKALVSAIGDKWENIVLAYEPV 384
+ L L AIGD Y PV
Sbjct: 469 SSRHPVPVLSILAKAIGDLATKEKTVYSPV 498
>01_06_0192 + 27347369-27348826,27349124-27349264,27349350-27351081,
27353739-27354606,27354784-27355957
Length = 1790
Score = 28.3 bits (60), Expect = 8.3
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +3
Query: 204 INVFAGCKLLSISSCDRATVLNTYSVRYTPTHIGRQPVTKSMVDILSLLG 353
+ FA K + SS ++ V +T+ Y P+ I ++ + K + ILS G
Sbjct: 963 LKAFASIKQVIFSSMEKNNVPHTFWSSYLPSLIQQKGIAKRIASILSGYG 1012
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,057,229
Number of Sequences: 37544
Number of extensions: 449964
Number of successful extensions: 1053
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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