Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19p02r
         (333 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...   190   4e-50
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...   184   2e-48
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    68   3e-13
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    25   4.0  
SPCC63.06 |||human WDR89 family WD repeat protein|Schizosaccharo...    24   5.3  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    24   7.0  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    24   7.0  
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom...    24   7.0  
SPAC24B11.09 |||conserved eukaryotic protein|Schizosaccharomyces...    24   7.0  
SPAC17A5.09c |||protein phosphatase regulatory subunit Glc9|Schi...    24   7.0  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    23   9.2  

>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score =  190 bits (464), Expect = 4e-50
 Identities = 84/101 (83%), Positives = 93/101 (92%)
 Frame = -2

Query: 317 KTKRTIQFVXWCPTGXKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF 138
           K++RTIQFV WCPTG K+GI Y+PP  VPG  +AKV RAVCMLSNTT+IAEAW+RLDHKF
Sbjct: 340 KSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKF 399

Query: 137 DLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG 15
           DLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+DYEEVG
Sbjct: 400 DLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVG 440


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score =  184 bits (449), Expect = 2e-48
 Identities = 82/101 (81%), Positives = 91/101 (90%)
 Frame = -2

Query: 317 KTKRTIQFVXWCPTGXKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF 138
           K KRTIQFV WCPTG K+GI  +PP  + G ++AKV RAVCMLSNTT+IAEAW+RLDHKF
Sbjct: 336 KAKRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKF 395

Query: 137 DLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG 15
           DLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+DYEEVG
Sbjct: 396 DLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVG 436


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 68.1 bits (159), Expect = 3e-13
 Identities = 34/99 (34%), Positives = 55/99 (55%)
 Frame = -2

Query: 317 KTKRTIQFVXWCPTGXKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF 138
           +TK +  FV W P      +   PP      DL   + +   + N+T+I E + RL  +F
Sbjct: 334 QTKNSAYFVEWIPDNVLKAVCSVPPK-----DL---KMSATFIGNSTSIQEIFRRLGDQF 385

Query: 137 DLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 21
             M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y++
Sbjct: 386 SAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
            Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 197  CMLSNTTAIAEAWARLDHKFDLMY 126
            C++      +  W RLD+ F LMY
Sbjct: 1336 CVIVEMATGSPPWPRLDNHFSLMY 1359


>SPCC63.06 |||human WDR89 family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 331

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 157 LALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPVRTW 47
           +AL   +   T S L+ +  SV++W   S  K +R W
Sbjct: 105 IALNKKNQFATGSELTRSLASVQLWDVRSEQKLIRQW 141


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 115 LSCTGTSVRVWRRESSPKPVRTWLPSR 35
           LS  GTS + +    SP PVRT L S+
Sbjct: 17  LSNNGTSNKAYSVPKSPAPVRTDLFSK 43


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = -3

Query: 142 SSTSCTPSVLSCTGTSVRVWRRESSPKPV 56
           ++T+ TP+  +C   +  +WRR    +P+
Sbjct: 627 NATNPTPTCTNCQTRTTPLWRRSPDGQPL 655


>SPAC3C7.09 |set8||lysine methyltransferase Set8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 429

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +2

Query: 209 EPWPSRLRAPRWV 247
           + WPS++  P+WV
Sbjct: 157 DSWPSKITLPKWV 169


>SPAC24B11.09 |||conserved eukaryotic protein|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 118

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -3

Query: 91 RVWRRESSPKPVRTWLPSRRIT 26
          R W   + PK V  W P+ + T
Sbjct: 8  RFWNHPAGPKTVHFWAPAMKWT 29


>SPAC17A5.09c |||protein phosphatase regulatory subunit
           Glc9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 310

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 92  EGMEEGEFSEAREDLAALEKDYEEV 18
           E MEE   SEA E++   + D+ E+
Sbjct: 241 EAMEEEALSEAEENIPKKKPDFNEL 265


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -3

Query: 124 PSVLSCT-GTSVRVWRRESSPKPVRTWLPSRRITKKSAMD 8
           P +L+ + G  VR+W       P+ T   S  ITK + ++
Sbjct: 379 PHILASSHGRLVRIWDDRYGSAPLHTIKTSENITKINGLE 418


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,263,053
Number of Sequences: 5004
Number of extensions: 21512
Number of successful extensions: 81
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)