Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19p01r
         (453 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit S18...    26   3.1  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    25   4.1  
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch...    25   5.4  

>SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit
           S18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 346 KSGLPRWWPQGDRRRAPR 399
           K GL R+W Q  RR AP+
Sbjct: 52  KVGLRRFWSQSPRRNAPK 69


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
            Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1530

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +2

Query: 302  LNIIADKSSSNIVLGSLAFLAGGLKETVGGHHGHVRKQ 415
            LN++A +  + +V G +     GL  T     G+V++Q
Sbjct: 928  LNVLAQRVDTGVVTGDMLVNGRGLDSTFQRRTGYVQQQ 965


>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 212 GGGLDPFDVFRDRHEGSS 265
           G G+DPFD+ R    G S
Sbjct: 423 GAGMDPFDILRAYQAGGS 440


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,250,217
Number of Sequences: 5004
Number of extensions: 19249
Number of successful extensions: 56
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)