Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19o24f
(752 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0629 - 4695778-4696077,4696242-4696406,4696497-4696673,469... 31 0.98
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57... 30 2.3
08_02_1302 - 25990378-25991457 29 3.0
01_06_0703 - 31326790-31326894,31327015-31327126,31327324-313274... 29 5.2
01_01_1106 + 8750597-8754031 29 5.2
07_01_0216 - 1615604-1615626,1615835-1617782 28 6.9
04_04_1361 - 32890775-32890837,32891071-32891239,32891285-328914... 28 6.9
11_05_0090 + 18979316-18981070 28 9.2
07_01_1034 - 8962703-8962748,8962831-8962991,8963068-8963905,896... 28 9.2
03_02_0371 + 7858170-7859624 28 9.2
01_05_0080 - 17957276-17957676,17957810-17957921,17958001-179581... 28 9.2
>07_01_0629 -
4695778-4696077,4696242-4696406,4696497-4696673,
4697157-4697455,4697589-4697751,4697897-4698088,
4698211-4698385,4698527-4698741,4698948-4699385
Length = 707
Score = 31.1 bits (67), Expect = 0.98
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +1
Query: 583 SVLKCTLHHMLSTTVDARLRGDESNCN-QLSQYRALRTGRSI 705
S +C +HH L TVDA L G + Y+A +GRS+
Sbjct: 375 SKTECRVHHKLEATVDAILAGKPPKFEARKMDYKATESGRSL 416
>02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-579174,
579266-579370,579975-580028,580244-580344,580454-581423,
582030-582203,582341-582643,582719-582856,582993-583247,
584230-584370,585008-585289,585395-585540,585627-585690,
585723-585799,586285-586301,587728-587867,587972-588029,
588121-588218,588727-588776,589260-589743
Length = 2630
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = +1
Query: 415 TYRQDGIEFHQPEGNLAISSNVIPFAPTFHSFHRHRLLLTRLIPSNLQTLGNTTVNSVLK 594
TYR G + H P +L P+A + + H+ +L L+P L + N ++ + L
Sbjct: 2501 TYRAAGAQPHAPSPHLQQLRMPSPYATSHGNQHQRPSILASLLPFVLPSSSNPSLTAPLS 2560
Query: 595 C-TLHHMLSTTVDA 633
T+ H S ++A
Sbjct: 2561 LNTVVHRTSGPLNA 2574
>08_02_1302 - 25990378-25991457
Length = 359
Score = 29.5 bits (63), Expect = 3.0
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = +1
Query: 481 IPFAPTFHSFHRHRLLLTRLIP-SNLQTLGNTTVNSVLKCTLHHMLSTTVDARLRGDESN 657
+ F+ +FH HR +L P ++ LG+T ++ TLH + TT A L ++
Sbjct: 183 VSFSVGGETFHAHRAVLAARSPVFRVELLGSTAEATMPCVTLHDIEPTTFRALLHFVYTD 242
Query: 658 CNQLSQYRALRTGRSISD 711
Q+ + + T S SD
Sbjct: 243 VLQIIEGSSSSTTASTSD 260
>01_06_0703 -
31326790-31326894,31327015-31327126,31327324-31327445,
31327573-31327658,31327783-31327901,31327991-31328053,
31328142-31328221,31328801-31328921,31329040-31329125,
31329318-31329413,31329510-31329584,31329869-31330210
Length = 468
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +2
Query: 242 RSPVSHQSYGNAILIPYC*TETISLRPQF--LFSLTSFVESKIILM*TW 382
R+P H +YG LI C +E + RP F + S+++++I W
Sbjct: 385 RAPPKHYAYGLRELIEQCWSENPASRPDFRTIIEQLSYIQNEISQRNRW 433
>01_01_1106 + 8750597-8754031
Length = 1144
Score = 28.7 bits (61), Expect = 5.2
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Frame = +1
Query: 454 GNLAISSNVIPFAPTFHSFHRHRLLLTRLIPSNLQTLGNTTVNSVLKCTLHHMLSTTVDA 633
GNL I + I H + R + + +P N+ L N ++ +CT + T++
Sbjct: 552 GNLEILPDTICSLQNLHFLNLSRCGVLQALPKNIGNLSNLLHLNLSQCTDLESIPTSI-G 610
Query: 634 RLRG----DESNCNQLSQ 675
R++ D S+C+ LS+
Sbjct: 611 RIKSLHILDLSHCSSLSE 628
>07_01_0216 - 1615604-1615626,1615835-1617782
Length = 656
Score = 28.3 bits (60), Expect = 6.9
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Frame = +1
Query: 460 LAISSNVIPFAPTFHSFHRHRLLLT---RLIPSNLQTLGNTTVNSVLKCTLHHMLSTTVD 630
+A++ V P A F SF L +T + + N Q + T V VL+C + VD
Sbjct: 523 IALTGKVTPLADVF-SFGILALEITCGQKPMKQNAQGIQQTLVGWVLECWKKGSVVDAVD 581
Query: 631 ARLRGDESN 657
A L+ D N
Sbjct: 582 ANLQADYDN 590
>04_04_1361 -
32890775-32890837,32891071-32891239,32891285-32891402,
32891760-32891861,32891930-32892000,32892315-32892532,
32892653-32893048,32893822-32893937,32894021-32894087
Length = 439
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = -2
Query: 310 DCFCLTVWDQNSIPVALVRYWTAPLVVRG*YPQQLP*RMVAN 185
D FC ++D + AL WT PLV +P MVA+
Sbjct: 360 DYFCCAIFDMELLVRALSVVWTTPLVATLGMSLTIPLAMVAD 401
>11_05_0090 + 18979316-18981070
Length = 584
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Frame = +1
Query: 358 EDNPDVNMDLRQLSALLLHTYRQD----GIEFHQPEGNLAISSNVIPF 489
+D DV+ D+ LS + H R GI+FH E N I +I F
Sbjct: 467 KDLDDVSGDIHGLSGRIFHCLRSSLRRVGIQFHLDEHNDCIGVRLIKF 514
>07_01_1034 -
8962703-8962748,8962831-8962991,8963068-8963905,
8963991-8964128,8964206-8964355,8964436-8964683,
8964825-8964953,8965735-8965960,8966909-8966975,
8967488-8967551,8968902-8969000,8969074-8969157,
8969240-8969321,8969412-8969460,8969664-8969769,
8970650-8970734,8970814-8970917,8970994-8971109,
8971187-8971373,8972005-8972113,8972633-8972761,
8973365-8973449,8973812-8973947,8974078-8974230,
8974488-8974634,8974801-8974941,8975580-8975903
Length = 1400
Score = 27.9 bits (59), Expect = 9.2
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Frame = -2
Query: 514 DERSGRLVQTVSHSKIWLNYLPAGEILYHLG-GTCEEVTRTVVLSPCS--HQDYLRFYE* 344
DE+SG L + IWL YLP+ ++L + G + T PCS + D + ++
Sbjct: 125 DEKSG-LAPDLESKHIWLKYLPSDKVLPLVNKGNFYQNGDTGPCGPCSQIYFDQIGHHD- 182
Query: 343 CQ*EQELWSEGDCFCLTVWD 284
L + D C+ +W+
Sbjct: 183 ---VASLLNNDDPGCIEIWN 199
>03_02_0371 + 7858170-7859624
Length = 484
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/55 (30%), Positives = 21/55 (38%)
Frame = +1
Query: 454 GNLAISSNVIPFAPTFHSFHRHRLLLTRLIPSNLQTLGNTTVNSVLKCTLHHMLS 618
G + P FH FH HRL PS L SV C+L +L+
Sbjct: 10 GTAGAAGGAASVKPQFHHFHHHRLATRHHHPSPTSLLSKLAFWSV--CSLSLLLA 62
>01_05_0080 -
17957276-17957676,17957810-17957921,17958001-17958126,
17958199-17958331,17960069-17960193,17960314-17960409,
17960430-17960621,17960694-17960800,17961318-17961426,
17961538-17961624,17963017-17963103,17964254-17964379
Length = 566
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 271 ECYFDPILLNRNNLPPTTIPVLIDIIRRIEDNPDVNMDL 387
+C +D + L N L P+T P+L R + +NP V + L
Sbjct: 401 KCLYDRLKLFPNLLSPSTRPLLRSNKRVVTNNPSVKVRL 439
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,789,278
Number of Sequences: 37544
Number of extensions: 405540
Number of successful extensions: 801
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -