Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19o16r
         (758 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    97   2e-22
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.58 
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   2.4  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   2.4  
S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor prot...    22   7.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   7.2  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   7.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   7.2  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   9.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.5  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 97.1 bits (231), Expect = 2e-22
 Identities = 68/233 (29%), Positives = 111/233 (47%), Gaps = 16/233 (6%)
 Frame = -3

Query: 729 CSLPTHKGLFGGSTTNINQYPGIAALLYTWNWNQWWQSCGGNILNQRSILSAAHCPYGDA 550
           C       + GG+ T IN++P +A +  T+        CG  I+++R +L+AAHC   + 
Sbjct: 153 CGWKNPSRIVGGTNTGINEFPMMAGIKRTYEPGM---ICGATIISKRYVLTAAHCIIDEN 209

Query: 549 TGRWRIRVG-----STFANSGGVVHNVNRIIIHPNYNRRTAD----SDLCILRSNSNIAY 397
           T +  I VG     S    +  V+H++N++IIHP Y+    D    +D+ +L++  +I +
Sbjct: 210 TTKLAIVVGEHDWSSKTETNATVLHSINKVIIHPKYDIIEKDDWQINDIALLKTEKDIKF 269

Query: 396 NNNVRPINIAGANY-NLGDNQVVWAAGWGATSLGGSNSEQLRHVQVWTINQNACVQRYRP 220
            + V P  +   ++ +      V   GWG TS  G  S  L+   +  + Q  C + Y  
Sbjct: 270 GDKVGPACLPFQHFLDSFAGSDVTVLGWGHTSFNGMLSHILQKTTLNMLTQVECYKYY-- 327

Query: 219 INRAITANMLCSGVLDVGGRDQCQGDSGGPLLHNR------VLVGVCSWGQYC 79
               I  N +C+      G+D CQ DSGGP+L         V +G+ SWG  C
Sbjct: 328 --GNIMVNAMCA---YAKGKDACQMDSGGPVLWQNPRTKRLVNIGIISWGAEC 375


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 22/73 (30%), Positives = 33/73 (45%)
 Frame = +1

Query: 322  SSPNNLVITKIVIGTSNINRTNVVVISYVGITA*DAEVTVSSTSVIVGMNDNSVHVMHNT 501
            ++  ++V+T +   T+ IN     VIS  G T     +  SSTS+      NS+ V  + 
Sbjct: 825  TTEQSVVVTNV---TTTINTPTTSVISMSGTTVPITSLPASSTSI------NSITVEKDV 875

Query: 502  PTVGKGGTNTNTP 540
                K    TNTP
Sbjct: 876  INDVKTQITTNTP 888


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 63  VSDGQRSTVPKSRHQRGRGCGGEDHRSHPGTGRDH 167
           + D + S +P  R++ G   G     S PGTGR+H
Sbjct: 372 LQDLRMSPLPSIRNRSGLVSGS----STPGTGREH 402


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +1

Query: 442 SSTSVIVG-MNDNSVHVMHNTPTVGKGGTNTNTPTACSVTVWTVSGT 579
           SS  V +G  ND++  +   +P+   GG+++ +P++ S    +VS T
Sbjct: 60  SSGGVELGWFNDSAAAITSTSPSYPGGGSSSPSPSSPSSFFSSVSPT 106


>S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor
           protein.
          Length = 85

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = +1

Query: 319 TSSPNNLVITKIVIGTSNINRTNVVVISY 405
           +S+  N ++  +++GT  I  + +++ISY
Sbjct: 2   SSTEANELVMSVIVGTVVIVSSLIILISY 30


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -3

Query: 681  INQYPGIAALLYTWNWNQWWQ 619
            +  Y   AA + TWN  ++W+
Sbjct: 1178 LRPYLRTAAAILTWNEKRFWE 1198


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
 Frame = +3

Query: 42  NANVNTRVSDGQRSTVPKS-RHQRGRGCGG 128
           NA V   V      + P S RHQR  GC G
Sbjct: 378 NAAVAAAVQSSSIVSSPDSARHQRIGGCNG 407


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 11/42 (26%), Positives = 16/42 (38%)
 Frame = +3

Query: 615 KTATTDSNSMYTTKQLYRDTG*CWSWSHQIILCGLVGNSRHS 740
           +T     N+ Y      R    CW+    II    +GN  H+
Sbjct: 190 RTCGNPWNTRYCLTPTERLEALCWTQDEDIICSTPIGNLSHA 231


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 534 IRVGSTFANSGGVVHNVNRIIIHPNYN 454
           +R  S   N GGV H  N  + H N++
Sbjct: 261 VRRDSRRKNYGGVYHLDNHHVHHANHH 287


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/42 (23%), Positives = 16/42 (38%)
 Frame = +3

Query: 615 KTATTDSNSMYTTKQLYRDTG*CWSWSHQIILCGLVGNSRHS 740
           +T     N+ Y      R    CW+    +I    +GN  H+
Sbjct: 137 RTCGNPWNTRYCLTPTERLEALCWTQDEDVICSTPIGNLSHA 178


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 239,913
Number of Sequences: 438
Number of extensions: 5951
Number of successful extensions: 20
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)