Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19o11r
         (845 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr...   215   5e-57
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase...    27   4.4  
SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces...    27   4.4  
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    26   7.7  
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom...    26   7.7  
SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S...    26   7.7  
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    26   7.7  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   7.7  

>SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 322

 Score =  215 bits (526), Expect = 5e-57
 Identities = 113/188 (60%), Positives = 135/188 (71%), Gaps = 2/188 (1%)
 Frame = -1

Query: 752 ASTWEGIQAAKELEKKHGIHCNLTLLFSLYQAIACAEANVTLISPFVGRILDWYVEHTKK 573
           AST+EGIQAAK+LE++ GIHCNLTLLFS  QA+ACAEANVTLISPFVGRILD+Y     +
Sbjct: 134 ASTYEGIQAAKQLEEE-GIHCNLTLLFSFVQAVACAEANVTLISPFVGRILDFYKAKNNR 192

Query: 572 TYEGKEDPGVVSVTKIYNYYKKFGYKTQVMGASFRNTGEIRELAGCDLLTISPKLLQELA 393
            Y  +EDPGVVSV+ I+NYYKKFGYKT VMGASFRN GEI+ELAG D LTISP LL++L 
Sbjct: 193 DYTAQEDPGVVSVSNIFNYYKKFGYKTIVMGASFRNVGEIKELAGVDFLTISPALLEQLN 252

Query: 392 SSXXXXXXXXXXXXXXLNDIEKIS-LT-ESEFRWHLNEDHMATDKLSDGIRRFAADTRKL 219
           +S                ++EK+S LT E +FR+  N D MA  KLS GI  FA D   L
Sbjct: 253 NSTDAVPKKLDASKASSLNLEKVSYLTDEPKFRFDFNNDEMAVVKLSTGIAAFAKDADTL 312

Query: 218 ESLIKTLL 195
            +++K  L
Sbjct: 313 RTILKAKL 320


>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
           desaturase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 362

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -1

Query: 704 HGIHCNLTLLFSLYQAIACAEANVTLISPFVGRILDWYVEHTKKTYEG 561
           H +  NL    +LY    C  AN+ + +PF      +++EH    Y+G
Sbjct: 110 HELSHNLGFKKTLYNRAYCLFANLPVGAPFAASFRPYHMEH--HAYQG 155


>SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 446

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = -1

Query: 701 GIHCNLTLLFSLYQAIACAEANVTLISPFVGRILDWYVEHTKKTYEGKEDPGVV 540
           GI C   L FSL  A+  +EA+V     F+  IL    E        ++D GVV
Sbjct: 152 GIKCESILCFSLLTALLDSEADVIEFGDFLISIL----ESDGAVVNSEDDEGVV 201


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = -1

Query: 311 SEFRWHLNEDHMATDKLSDGIRRFAADTRKLESLIKTLL 195
           S+F+W  N ++  +  + D  R    + RK++ +IK ++
Sbjct: 190 SKFKWDSNNNNDWSSLMKDCFRDVVNNNRKMKEIIKDVM 228


>SPBC6B1.05c |||ubiquitin-like conjugating
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 649

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 8/50 (16%)
 Frame = +3

Query: 624 Y*CNICFSTGNSLVQR--EQQCKIT------MDSMLLLQLFGCLNSFPSG 749
           Y CN  F+  NSLV R  +Q C +T      + + + ++LF  L   P+G
Sbjct: 500 YFCNDIFAPSNSLVDRTLDQTCTVTRSGCANIATAIAVELFVSLLQHPNG 549


>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
           Sop2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 377

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 584 HTKKTYEGKEDPGVVSVTKIYNYYKKFGYK 495
           HT  T EG+E+ G VS T + + ++    K
Sbjct: 301 HTGNTGEGREEEGPVSFTALRSTFRNMDLK 330


>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +1

Query: 316 VSDIFSMSFKAANFGSRTFFSG-LSLLAN 399
           +SDI S S K AN  S+  FSG L+  AN
Sbjct: 173 LSDISSSSMKKANNSSKPLFSGKLTFKAN 201


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 956

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +1

Query: 553  SSLPS*VFFVCSTYQSNIRPTNGDISVTFASAQAIAWYKENNSVR 687
            SS+ S   FVC       +P     S++  S    + +K NNS+R
Sbjct: 868  SSINSKEAFVCLDRSKESKPIESCFSLSIQSVYMQSQFKYNNSIR 912


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,346,060
Number of Sequences: 5004
Number of extensions: 69027
Number of successful extensions: 190
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)