Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19o11f
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr...   164   1e-41
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    28   1.1  
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    27   2.6  
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe...    27   3.4  
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    27   3.4  
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa...    26   4.5  
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom...    26   5.9  
SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1...    26   5.9  
SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr 3||...    25   7.8  
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    25   7.8  
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    25   7.8  

>SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 322

 Score =  164 bits (398), Expect = 1e-41
 Identities = 83/147 (56%), Positives = 105/147 (71%), Gaps = 1/147 (0%)
 Frame = +3

Query: 258 MSALDQLKQHSTVV-ADTGDFEAMKEYKPTDATTNPSLILSAAGMEQYQHILDKAIKYGK 434
           MS+L+QLK   TVV +DTGDFE++ +YKP DATTNPSLIL+A+   QY  ++D A+ Y K
Sbjct: 1   MSSLEQLKATGTVVVSDTGDFESIAKYKPQDATTNPSLILAASKKPQYAALVDAAVDYAK 60

Query: 435 DNGSSIEEQVAETLDMLSVLFGCEILKIIPGRVSVEVDARLSFDKDASIAKAIKFINLFA 614
             G SI  Q+    D L + FG +IL I+PGRVS EVDAR SFD   +I KA   I L+ 
Sbjct: 61  AKGGSINSQIEIAFDRLLIEFGTKILAIVPGRVSTEVDARYSFDTQTTIEKARHLIKLYE 120

Query: 615 EHGIKKERILIKLASTWEGIQAAKELE 695
             GI +ER+LIK+AST+EGIQAAK+LE
Sbjct: 121 AEGIGRERVLIKIASTYEGIQAAKQLE 147


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = -3

Query: 625 IPCSANKLINLIAFAMLASLSNDNLASTSTDTRPGIIFNISHPKSTLSISKVSATCSSME 446
           +P S NK+ +   F  +     +N    S+ ++   I N S P   +S + +SAT  S+E
Sbjct: 150 VPRSLNKIHDPSRF--IKDNDVENRIHVSSASKVASISNTSKPNPIVSENPISATSVSIE 207

Query: 445 LPL 437
           +P+
Sbjct: 208 IPI 210


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = -3

Query: 634 SFLIPCSANKLINLIAFAMLASLSNDNLASTSTDTRPGIIFNISHPKSTLS 482
           S LIP   +K    +A    +SL ++NLA+ +  T    IF+++ PK   S
Sbjct: 159 SILIPTFVSKFNEFLALD--SSLRDNNLATVAVITTDKAIFSLNVPKKKRS 207


>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 652

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +3

Query: 219 VSMSGEPD-TKRTKMSALDQLKQHSTVVADTGDFEAMKEYKPTDATTNPSLILSAAGMEQ 395
           VS S  PD TKR   S L ++K    +       ++ K+ KP+   T+  + L+ A M  
Sbjct: 141 VSQSFFPDVTKRLPCSCLSEIKNIDDLGLKQRILDSYKKQKPSGQLTSMQIELAKA-MFN 199

Query: 396 YQHI 407
           YQ +
Sbjct: 200 YQDV 203


>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
           Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
 Frame = +3

Query: 159 KIDFFRSVYLNYTVQ-CNISLV---SMSGEPDTKRTKMS----ALDQLKQHSTVVADTGD 314
           +I+F R++   Y ++   I L+   S S  P +  T ++     LDQ+K  ++ V D   
Sbjct: 670 RIEFLRALQFTYELRKLFIELITSKSSSVHPSSVLTYLALIPLTLDQVKSGTSSVMDLSS 729

Query: 315 FEAMKEYKPTDATTNPSLILSAAGMEQYQ 401
              +        T +P     A G+EQ Q
Sbjct: 730 SRELSNLNERSITIDPRAEEQAQGLEQEQ 758


>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
           Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 18/66 (27%), Positives = 30/66 (45%)
 Frame = +3

Query: 291 TVVADTGDFEAMKEYKPTDATTNPSLILSAAGMEQYQHILDKAIKYGKDNGSSIEEQVAE 470
           T +AD  +     + +  D  T   L+L + G+E Y    D A      N  S+EE + +
Sbjct: 273 TTIADYKEVAIQNKIEDDDTWTAQELVLLSEGVEMYSD--DWAKVASHVNTKSVEECILK 330

Query: 471 TLDMLS 488
            L++ S
Sbjct: 331 FLNLPS 336


>SPAC6G10.08 |idp1||isocitrate dehydrogenase
           Idp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = -2

Query: 506 FTPKKHTQHIQSFSHLFFNGASIILSIFNS 417
           FTPK +    ++++   FNG+ + +S++N+
Sbjct: 166 FTPKGNPSAKETYNVYEFNGSGVAMSMYNT 195


>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 588

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +3

Query: 594 KFINLFAEHGIKKERI-LIKLASTWEGIQAA 683
           + ++LF+ HG++KE + L+  AS +  IQ A
Sbjct: 216 RILSLFSFHGVRKESLELLWRASKYPNIQGA 246


>SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 454

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 627 KKERILIKLASTWEGIQAAKEL 692
           +K+ I +   + WEG+Q AKEL
Sbjct: 299 EKKTITLHNGNQWEGLQMAKEL 320


>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1052

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 18/80 (22%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
 Frame = +3

Query: 189 NYTVQCNISLVSMSGE--PDTKRTKMSALDQLKQHSTVVADTGDFEAMKEYKPTDATTNP 362
           N+ V C++ + + +    PDT   ++   + +K    +  ++   EA K+Y+P++     
Sbjct: 702 NFPVDCSLPVQTGADVVVPDTTDEEVITSEPVKLEQPINENSNVEEAEKDYQPSEKDDKS 761

Query: 363 SL--ILSAAGMEQYQHILDK 416
            +  ILS   M Q   + D+
Sbjct: 762 LIGGILSTVEMTQSTDVNDE 781


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -3

Query: 520 IIFNISHPKSTLSISKVSATCSSMELPLSF 431
           II N+   KS L+  KV A CS +   LSF
Sbjct: 596 IIQNVEKLKSYLNSFKVQAECSEISKILSF 625


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,933,044
Number of Sequences: 5004
Number of extensions: 62158
Number of successful extensions: 161
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)