Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19o11f
         (696 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006729-1|AAK93861.1|  319|Caenorhabditis elegans Hypothetical ...   181   4e-46
Z68159-7|CAA92286.1|  604|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U43283-1|AAC69025.1|  412|Caenorhabditis elegans Hypothetical pr...    28   7.3  
AF067611-2|AAW88406.1| 2302|Caenorhabditis elegans Cadherin fami...    28   7.3  
AF067214-8|AAC17008.1|   69|Caenorhabditis elegans Hypothetical ...    28   7.3  
Z81147-12|CAB03539.2|  494|Caenorhabditis elegans Hypothetical p...    27   9.7  
Z73911-4|CAA98141.2|  625|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>AC006729-1|AAK93861.1|  319|Caenorhabditis elegans Hypothetical
           protein Y24D9A.8a protein.
          Length = 319

 Score =  181 bits (441), Expect = 4e-46
 Identities = 90/146 (61%), Positives = 113/146 (77%)
 Frame = +3

Query: 258 MSALDQLKQHSTVVADTGDFEAMKEYKPTDATTNPSLILSAAGMEQYQHILDKAIKYGKD 437
           MS L+QLK  S VVADTGDF A+KE++PTDATTNPSLIL+A+ MEQY  ++D+++ Y K+
Sbjct: 1   MSVLEQLKGASVVVADTGDFNAIKEFQPTDATTNPSLILAASKMEQYAALIDQSVAYAKE 60

Query: 438 NGSSIEEQVAETLDMLSVLFGCEILKIIPGRVSVEVDARLSFDKDASIAKAIKFINLFAE 617
           + S  +E +   +D L V+FG EILK IPGRVS EVDARLSFD  ASI +A+  I  + +
Sbjct: 61  HASGHQEVLQAAMDRLFVVFGKEILKTIPGRVSTEVDARLSFDTQASIDRALGLIAQYEK 120

Query: 618 HGIKKERILIKLASTWEGIQAAKELE 695
            GI K+RILIKLASTWEGI+AAK LE
Sbjct: 121 EGISKDRILIKLASTWEGIRAAKFLE 146


>Z68159-7|CAA92286.1|  604|Caenorhabditis elegans Hypothetical
           protein C33D9.8 protein.
          Length = 604

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
 Frame = +3

Query: 435 DNGSSIEEQVAETLDMLSVLFGCEILKIIPGRVSV-EVDARLSFDKDASIAKAIKFINLF 611
           D  S++ E++ E    ++++      +    +V + E  A+L+ +KD  I K  + I L 
Sbjct: 218 DPSSTMNEELTELRSQMNLIIEYNEKQETVWQVKLSEASAQLN-EKDLVIEKITRKIELL 276

Query: 612 AEHGIKKERILIKLASTWEGIQAAKELE 695
            E+ +KK++ + +L   +E     K L+
Sbjct: 277 QENNVKKDQRIYELEQCFESEDYCKILQ 304


>U43283-1|AAC69025.1|  412|Caenorhabditis elegans Hypothetical
           protein T25G12.5 protein.
          Length = 412

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
 Frame = +3

Query: 318 EAMKEYKPTDATTNPSLILSAAGMEQYQHILDKAIKYGKDN---GSSIEEQVAETLDMLS 488
           E  K    T   T P++   A G+      LD A +Y  +    G+ I      +  +  
Sbjct: 255 EGFKVAMKTFDKTRPTVAALATGVAY--RCLDVATQYSLERKAFGTQIANHQGVSFLLAE 312

Query: 489 VLFGCEILKIIPGRVSVEVDARLSFDKDASIAK 587
           +   CE+ +++  +   EVDA       ASIAK
Sbjct: 313 MAINCELARLMTYKSGAEVDAGRPGSYYASIAK 345


>AF067611-2|AAW88406.1| 2302|Caenorhabditis elegans Cadherin family
           protein 10 protein.
          Length = 2302

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
 Frame = +3

Query: 207 NISLVSMSGEPDTKRTKMSALDQLKQHSTVVADTGDFEAMKEYKPTD--ATTNPSLILSA 380
           NIS+  +   P TKRT+++  D+ K   T V  T       E    D  + T   L L  
Sbjct: 196 NISVDVIKLAPTTKRTRVTVPDRPKLMETTVPVTSSSSTSSEMIEVDGESETQEDLTLGG 255

Query: 381 AGME 392
            G E
Sbjct: 256 GGAE 259


>AF067214-8|AAC17008.1|   69|Caenorhabditis elegans Hypothetical
           protein F56C3.8 protein.
          Length = 69

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -3

Query: 631 FLIPCSANKLINLIAFAMLASLSNDNLASTSTDTRPGIIFNI 506
           F++    N ++ LI      SL +D L   +TD +PG++  +
Sbjct: 5   FIVTKMKNTVLLLILALFFISLRDDGLQMPNTDLKPGLLMQM 46


>Z81147-12|CAB03539.2|  494|Caenorhabditis elegans Hypothetical
           protein T09E11.6 protein.
          Length = 494

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 494 KHTQHIQSFSHLFFNGASIILSIFNSFIKNVLILFH 387
           +H Q + SF+HL FN   +I S  NS ++    L H
Sbjct: 413 EHFQAVASFTHLMFN--KVIPSFDNSIVECTAELLH 446


>Z73911-4|CAA98141.2|  625|Caenorhabditis elegans Hypothetical
           protein T12A7.1 protein.
          Length = 625

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
 Frame = +3

Query: 339 PTDATTNPSLILSAAG-MEQYQHILDKAIKYGKDNGSSIEEQVA-ETLDMLSVLFGCEIL 512
           P D     S ++   G M  Y+H L     YG  N S I  +VA +   M+      +IL
Sbjct: 401 PLDLNRQSSSVVGINGVMNAYRHALQNVTLYGPTNFSPIIVEVANKAQKMMKTTARYQIL 460

Query: 513 KIIPGRVSVEVDARLSFDKDAS 578
            II   +  ++ A ++   +AS
Sbjct: 461 LIITDGIISDMYATINTVINAS 482


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,919,955
Number of Sequences: 27780
Number of extensions: 336342
Number of successful extensions: 839
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)