Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19o10r
         (784 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac...    52   9e-08
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc...    52   9e-08
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    42   8e-05
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha...    41   2e-04
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c...    35   0.011
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ...    33   0.046
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    29   0.57 
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    29   0.99 
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    28   1.7  
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2...    27   2.3  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    27   2.3  
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po...    27   4.0  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    26   5.3  
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom...    26   5.3  
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    26   7.0  
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb...    26   7.0  
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    25   9.3  
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   9.3  

>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
           Txl1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 290

 Score = 52.0 bits (119), Expect = 9e-08
 Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = -2

Query: 780 WCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXI-ASEYNINSMPTFVFVKNGKKLDE 604
           WCGPCK I P   ++A++                   AS   + +MPTFVF +NGK++D 
Sbjct: 30  WCGPCKAISPLFSQLASKYASPKFVFAKVNVDEQRQIASGLGVKAMPTFVFFENGKQIDM 89

Query: 603 FSGAN 589
            +GAN
Sbjct: 90  LTGAN 94


>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score = 52.0 bits (119), Expect = 9e-08
 Identities = 24/65 (36%), Positives = 35/65 (53%)
 Frame = -2

Query: 783 TWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXIASEYNINSMPTFVFVKNGKKLDE 604
           TWCGPCK I PK ++ +                   IA+E  +++MP+F   KNG+K++E
Sbjct: 28  TWCGPCKAIAPKFEQFS-NTYSDATFIKVDVDQLSEIAAEAGVHAMPSFFLYKNGEKIEE 86

Query: 603 FSGAN 589
             GAN
Sbjct: 87  IVGAN 91


>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 42.3 bits (95), Expect = 8e-05
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = -2

Query: 780 WCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXI-ASEYNINSMPTFVFVKNGKKLDE 604
           WCG CK + P+ +  A E+                   SEY+I   PT    KNGK++ +
Sbjct: 50  WCGHCKALAPEYESAADELEKDGISLVEVDCTEEGDLCSEYSIRGYPTLNVFKNGKQISQ 109

Query: 603 FSG 595
           +SG
Sbjct: 110 YSG 112



 Score = 29.1 bits (62), Expect = 0.75
 Identities = 15/58 (25%), Positives = 24/58 (41%)
 Frame = -2

Query: 780 WCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXIASEYNINSMPTFVFVKNGKKLD 607
           WCG CK + P  +++A E                   S  +I+  PT +F K   K++
Sbjct: 384 WCGHCKNLAPTYEKLAEEYSDDSNVVVAKIDATENDIS-VSISGFPTIMFFKANDKVN 440


>SPBC12D12.07c |trx2||mitochondrial thioredoxin
           Trx2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 20/65 (30%), Positives = 33/65 (50%)
 Frame = -2

Query: 780 WCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXIASEYNINSMPTFVFVKNGKKLDEF 601
           WCGPCK + P L+++ +E                 IA +  + ++PT V  + G++LD  
Sbjct: 46  WCGPCKYLKPFLEKL-SEQNQKASFIAVNADKFSDIAQKNGVYALPTMVLFRKGQELDRI 104

Query: 600 SGANV 586
            GA+V
Sbjct: 105 VGADV 109


>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 35.1 bits (77), Expect = 0.011
 Identities = 17/64 (26%), Positives = 26/64 (40%)
 Frame = -2

Query: 780 WCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXIASEYNINSMPTFVFVKNGKKLDEF 601
           W  PCK +    D+ A +                  A  +++N++P FV +   K L   
Sbjct: 31  WAAPCKQMNQVFDQFAKDTKNAVFLKIEAEKFSDI-AESFDVNAVPLFVLIHGAKVLARI 89

Query: 600 SGAN 589
           SGAN
Sbjct: 90  SGAN 93


>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 359

 Score = 33.1 bits (72), Expect = 0.046
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
 Frame = -2

Query: 783 TWCGPCKMIGPKLDEIAA--EMXXXXXXXXXXXXXXXXIASEYNINSMPTFV-FVKNGKK 613
           TWCG CK + P  +E+ A  E                 +A +Y+I   PT + F  +G +
Sbjct: 49  TWCGHCKSLAPVYEELGALFEDHNDVLIGKIDADTHSDVADKYHITGFPTLIWFPPDGSE 108

Query: 612 LDEFSGA 592
             ++S A
Sbjct: 109 PVQYSNA 115


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 29.5 bits (63), Expect = 0.57
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
 Frame = -2

Query: 777 CGPCKMIGPKLD---EIAAEMXXXXXXXXXXXXXXXXIASEYNINSMPTFVFVKNGKKLD 607
           CG CK +GP  D   E A E                 ++S  NI ++PT    +NG+ ++
Sbjct: 54  CGACKRLGPMWDNMVEKAKEQVEGSNFHFGEVDCSKELSSCANIRAVPTLYLYQNGEIVE 113

Query: 606 E 604
           E
Sbjct: 114 E 114


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 432 KFITDVKNIFYSFIKNVYMFFFFNSILVSI 521
           KFI D +N F+  I   Y F  F ++L+ +
Sbjct: 436 KFILDSQNFFFESINTEYSFIIFTNLLMHL 465


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 427 SSNSLQTLKTFFIHLLKTYTCFFFLIP 507
           SS    +L  +F+ L++ + CFFF+ P
Sbjct: 50  SSGPFISLSFWFLSLVRGFVCFFFMFP 76


>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
           Mei2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 750

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +3

Query: 408 QTQKINIFKFITDVKNIFYSFIKNVYMFFFFNSILVSIGGC 530
           ++ + N   ++TD +NIF +F+ N   + F  + L  I  C
Sbjct: 71  KSSESNSIDYLTDTQNIFPNFVNNENNYQFSTAPLNPIDAC 111


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1428

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 200  IGEIIHLSKPDKNKNKNITIHTLKFLSNHL 289
            +G I HL K D+N  K   ++TL F+ N L
Sbjct: 1251 LGFIHHLKKKDQNMEKVPVLYTLDFIWNTL 1280


>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 363

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 2/66 (3%)
 Frame = -2

Query: 780 WCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXIA--SEYNINSMPTFVFVKNGKKLD 607
           WCG CK + P   ++A+ +                 A  S+Y +   PT   V    K  
Sbjct: 59  WCGYCKKLVPTYQKLASNLHSLLPVTAVDCDADQNRAVCSQYQVQGFPTIKLVYPSSKGS 118

Query: 606 EFSGAN 589
             S  +
Sbjct: 119 SLSSTD 124


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +3

Query: 387 FFAFQRLQTQKINIFKFITDVKNIFYSFIKNVYMFFFFNSILVSI 521
           +F   +++T K     FI   KNIF  F     +FF F  IL SI
Sbjct: 84  WFPRNKIRTAKYTPIDFIP--KNIFLQFQNVANLFFLFLVILQSI 126


>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +2

Query: 164 KHDGNLSYTLISIGEIIHLSKPDKNKNKNITIHTL 268
           K DG+      S GE++H  + ++ KN+ + I+ L
Sbjct: 301 KLDGSFMEVKRSAGEVVHPGETERVKNQGMPIYNL 335


>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 14/61 (22%), Positives = 28/61 (45%)
 Frame = +3

Query: 369 ITTEPIFFAFQRLQTQKINIFKFITDVKNIFYSFIKNVYMFFFFNSILVSIGGCVQL*SL 548
           + T+ I+F   +  T  +   + +  +++ F S ++N+  FF       S G C+    L
Sbjct: 22  VITQLIYFLTSKKITN-LGKIRLVKSIRDSFLSQLENILCFFLVYRTTYSFGVCLMKRFL 80

Query: 549 F 551
           F
Sbjct: 81  F 81


>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 695

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = +2

Query: 152 KSF*KH---DGNLSYTLISIGEIIHLSKPDKNKNKNITIHTLKFLSNHLVKKTKI 307
           KSF KH   D  L  ++ S+ ++    KP KN N +   HTL    + L++ +K+
Sbjct: 223 KSFQKHKRLDEQLLNSVKSMKKVSQQLKPQKNTNDSNNDHTL-LSQDQLIELSKL 276


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 418 KLISSNSLQTLKTFFIHLLKTY 483
           KL+SSN+LQ +  F+  ++K +
Sbjct: 412 KLVSSNTLQAMSHFYATMIKLF 433


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = +1

Query: 559 FKDSCFEFVDVSAREFVQFLAILNEDERRHRVNVVLAGDVLALINVHLHNDDGI*HFGG 735
           F  + +E+VD ++ + + F+  L  +      ++   GD +  INV L + D   +FGG
Sbjct: 114 FSANLYEYVDGNS-DGISFVLNLENNNDTSVYHMTFHGDRVKPINVFLGSTDVTPNFGG 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,011,038
Number of Sequences: 5004
Number of extensions: 60857
Number of successful extensions: 200
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)