Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19o06r
(832 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58746-2|AAB00622.2| 283|Caenorhabditis elegans Hypothetical pr... 109 3e-24
U41264-7|AAA82427.2| 819|Caenorhabditis elegans Hypothetical pr... 30 1.8
AL132948-42|CAN86925.1| 131|Caenorhabditis elegans Hypothetical... 30 1.8
AL132948-41|CAC51075.1| 129|Caenorhabditis elegans Hypothetical... 30 1.8
Z81587-6|CAB04704.1| 417|Caenorhabditis elegans Hypothetical pr... 29 5.4
AF040646-1|AAK31537.1| 530|Caenorhabditis elegans Collagen prot... 29 5.4
Z81528-8|CAB04288.2| 643|Caenorhabditis elegans Hypothetical pr... 28 7.1
AL022274-1|CAA18357.1| 349|Caenorhabditis elegans Hypothetical ... 28 9.4
>U58746-2|AAB00622.2| 283|Caenorhabditis elegans Hypothetical
protein R05G6.7 protein.
Length = 283
Score = 109 bits (261), Expect = 3e-24
Identities = 56/182 (30%), Positives = 94/182 (51%)
Frame = -1
Query: 823 FLPHRLETKTGKLKTSFTNDTVAVNTNLDLDLAGPVVDVAAVLNYQGWLAGVHTQFDTQK 644
+ PH + ++GK+K + T V ++ + A PV++ A V + GWL G FD+
Sbjct: 104 YAPHAGK-RSGKVKLDWALPTARVTADVGVTSA-PVINAAGVFSRDGWLIGAAATFDSSS 161
Query: 643 AKFSKNNFALGYQSGDFALHTNVDNGKDFGGSIYQKVSDKLDCGVSMKWTAGSADTLFGV 464
K + + A G+ + + LH+ V N DFG S+Y KV+ ++ G + W G + +
Sbjct: 162 NKLAATSLAFGHSTPQYTLHSFVINSTDFGASLYHKVASNVEVGTQLGWKVGGNGADYAL 221
Query: 463 GAKYALDQDASLHAKINNKSLIGLGYQQKLRPGVTLTLSAAIDGQNFNAGGHKVGVALEL 284
KYA +D ++ AK+N+ S + + L P + LTLS + +A HK G+ LE
Sbjct: 222 ATKYAPSRDLTVRAKVNSSSQVAVAATHSLSPALKLTLSTQFNLAANDA--HKFGLGLEF 279
Query: 283 EP 278
+P
Sbjct: 280 DP 281
>U41264-7|AAA82427.2| 819|Caenorhabditis elegans Hypothetical
protein F10E7.4 protein.
Length = 819
Score = 30.3 bits (65), Expect = 1.8
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = -1
Query: 673 GVHTQFDTQKAKFSKNNFALGYQSGDFALHTNVDNGKDFGGSIYQKVSDKLDCGVSMKWT 494
G QF+T++ K GY+ +L N +DFG + +++DC VS KWT
Sbjct: 657 GNRNQFETEEE--CKQICLPGYEKSK-SLIPNNQLLEDFGNTEVDDGGERVDCEVS-KWT 712
Query: 493 A-GSADTLFGVGAK 455
A GS G G K
Sbjct: 713 AWGSCSVSCGRGKK 726
>AL132948-42|CAN86925.1| 131|Caenorhabditis elegans Hypothetical
protein Y39B6A.3b protein.
Length = 131
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = -1
Query: 430 LHAKINNKSLIGLGYQQKLRPGVTLTLSAAIDGQNFNAGGHKVGVALELEP 278
L A+ N+ + + +G +QK G+T TL A D Q F+ + G+ + +EP
Sbjct: 40 LLAQQNDANALKIGVRQKGCNGLTYTLEYAKDKQKFDEEVEQDGIKVWIEP 90
>AL132948-41|CAC51075.1| 129|Caenorhabditis elegans Hypothetical
protein Y39B6A.3a protein.
Length = 129
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = -1
Query: 430 LHAKINNKSLIGLGYQQKLRPGVTLTLSAAIDGQNFNAGGHKVGVALELEP 278
L A+ N+ + + +G +QK G+T TL A D Q F+ + G+ + +EP
Sbjct: 38 LLAQQNDANALKIGVRQKGCNGLTYTLEYAKDKQKFDEEVEQDGIKVWIEP 88
>Z81587-6|CAB04704.1| 417|Caenorhabditis elegans Hypothetical
protein T06G6.8 protein.
Length = 417
Score = 28.7 bits (61), Expect = 5.4
Identities = 22/78 (28%), Positives = 34/78 (43%)
Frame = -2
Query: 453 TRWTKTRLCTPRSTTSPSSVLVTNRNYAQA*PLHCLLPSMDRTSMQVATRLALPSNSSPR 274
T+ ++TR T STT+ T+ +A P PS ++ AT LP+ S R
Sbjct: 238 TKPSRTRSLTSTSTTTAKLPTTTSTTFAA--PQASTEPSEATEALATATPADLPTKPSGR 295
Query: 273 KYNQTYSCR*IHTVVTTK 220
+ R + + TTK
Sbjct: 296 EITTITGTRKLSSTSTTK 313
>AF040646-1|AAK31537.1| 530|Caenorhabditis elegans Collagen protein
70 protein.
Length = 530
Score = 28.7 bits (61), Expect = 5.4
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Frame = -2
Query: 501 SGRRVRP---THYSELERSTRWTKTRLCTPRSTTSPSSVLVTNRNYAQA*PLHCLLPSMD 331
SG R P HY + + + T CTPR+TT+ ++ T A P P+
Sbjct: 261 SGYRTIPPVYNHYETVPPAAQTTPQPPCTPRTTTTTTTTTTTT-----ALPPCVYTPAPP 315
Query: 330 RTSMQVATRLALPSNSSPRKYNQT 259
T+ A P+ +PR Y+ T
Sbjct: 316 ATAPPAT---ATPATQTPRTYSTT 336
>Z81528-8|CAB04288.2| 643|Caenorhabditis elegans Hypothetical
protein F35E2.9 protein.
Length = 643
Score = 28.3 bits (60), Expect = 7.1
Identities = 18/65 (27%), Positives = 29/65 (44%)
Frame = -1
Query: 655 DTQKAKFSKNNFALGYQSGDFALHTNVDNGKDFGGSIYQKVSDKLDCGVSMKWTAGSADT 476
D K S + F + S +H N+ GS+++ + KL G S K +T
Sbjct: 455 DENSIKRSDSGFDAYFFSHSIWMHKNITVNMSTSGSLFKDPNSKL-YGTSTK-IVNDKET 512
Query: 475 LFGVG 461
+FG+G
Sbjct: 513 VFGIG 517
>AL022274-1|CAA18357.1| 349|Caenorhabditis elegans Hypothetical
protein H24D24.1 protein.
Length = 349
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 242 YILLSQPNSVYRESISIVEITCIVPGAFKTQYSFPAF 132
Y+LL+ P+ YR SI+ CI P ++ + + F F
Sbjct: 79 YVLLALPDYHYRYQKSIMSSICIPPPSYASCFLFVHF 115
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,493,454
Number of Sequences: 27780
Number of extensions: 434983
Number of successful extensions: 1045
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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