Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19o04r
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po...    38   0.002
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy...    28   2.0  
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    27   3.6  
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    27   4.7  
SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyc...    26   8.2  

>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 619

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 16/53 (30%), Positives = 33/53 (62%)
 Frame = -1

Query: 870 VTWNVIRDAMGNVLYQLSSMKFKDPVKDGEPKIKADFDQLLEDMSAAFRNLED 712
           V W+ I+++  ++ Y+L+SMKF++P  +GE +I   ++ L + +   F  L +
Sbjct: 568 VPWSKIKESTSDIFYELTSMKFENP-NEGEKEIVEHYETLHKKIEDKFHTLTE 619


>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +2

Query: 722 LRKAADISSKSWSKSALILGSPSFTGSLNFMEESW*STLPMASRMTFH 865
           L +AA +SS  WS + L+L + S +  L ++  +      MA+ + FH
Sbjct: 153 LGQAAGVSSTDWSCAQLLLAAVSISTDLKYIPTNQHIVGVMAAVIVFH 200


>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
 Frame = -1

Query: 768 ADFDQLLEDMSAAFRNLED*TLYCL*NIIVIETLKFTEINFN-VKRKYSE*PKLILCVVA 592
           A FD +L++     + L+   L      I+   L   +   N VK  +++  +L+ C   
Sbjct: 427 ASFDMVLDESLQVLKKLQTLHLSFTLGDIIPNYLTLADYLLNFVKTSFAQIYELV-CSFV 485

Query: 591 NIIDILSSQHRL*LRTKECNVIIEL 517
           N + ++ S     LRT  C  I+ L
Sbjct: 486 NNVAVMESSSEKQLRTSRCLKIVRL 510


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +1

Query: 721 VAESGRHIF*KLVEIGLDLRFTVFHWVLELHGGELVEHVAHGVAD 855
           V ES   I+  L  +G+DL    FHW L ++   L  +++  + D
Sbjct: 643 VKESLPEIYSHLELLGVDLDAISFHWFLSVYTDTLPTNISFRIFD 687


>SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 377 KRQRAPLYIFRSRCSDAFY*RTCV 306
           KR RAPLYI  + CS  ++ R+ +
Sbjct: 7   KRLRAPLYIQNAYCSKNYFYRSFI 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,404,830
Number of Sequences: 5004
Number of extensions: 67405
Number of successful extensions: 122
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)