Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19o02r
         (334 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0172 - 1928648-1930751,1932019-1932243,1933709-1934676           27   4.9  
06_03_0215 - 18080286-18080914,18080925-18080997                       27   4.9  
09_06_0035 - 20375009-20375080,20375290-20375379,20376582-203766...    26   6.4  

>10_01_0172 - 1928648-1930751,1932019-1932243,1933709-1934676
          Length = 1098

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 52  TISLYLLVVSFEEFGKSVVQSVIQLFGYVXCRXE 153
           TIS YLL+   +E  + +V S  Q  G   CR E
Sbjct: 414 TISDYLLLTDNKERSRIIVTSRFQAVGSTCCRPE 447


>06_03_0215 - 18080286-18080914,18080925-18080997
          Length = 233

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -1

Query: 319 ATIFGRELAVASSGSLVVEDIRLVSTVSXRLLPS 218
           A  FG  LA  SS S V  D+RL + V+   LP+
Sbjct: 36  ALAFGFVLATFSSLSAVAADLRLAAVVAPVFLPT 69


>09_06_0035 -
           20375009-20375080,20375290-20375379,20376582-20376684,
           20376784-20376864,20376966-20377192
          Length = 190

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +3

Query: 168 DSTLPTVRTALSSLTLMLGSNRXLTVETRRISSTTRLPLLATANSL 305
           D++   +   ++S+   LG    L +     SS ++LPLL   NSL
Sbjct: 34  DASKQNLALMMASIQRTLGLLHQLNLNVSSFSSASQLPLLQRLNSL 79


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,068,448
Number of Sequences: 37544
Number of extensions: 94371
Number of successful extensions: 214
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)