Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19o01r
         (482 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce...    27   1.1  
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    27   1.5  
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    27   2.0  
SPCC790.03 |||rhomboid family protease|Schizosaccharomyces pombe...    26   3.4  
SPBC23G7.07c |||replication regulator |Schizosaccharomyces pombe...    26   3.4  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    25   6.0  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    25   6.0  
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb...    25   6.0  

>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 698

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 94  FGKSNANDIYPVVLTSISSFTEWILQN 14
           FG S AN + PV L S  SFT +++++
Sbjct: 243 FGNSFANGLPPVFLNSSRSFTSYLVKS 269


>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 18/61 (29%), Positives = 25/61 (40%)
 Frame = +2

Query: 203 SHDAIMTLVLFPAVFFVGHNEFELVEVAVRYTAALNGSSPSEQINKNTLGYYDTLLDNST 382
           S+D I  L+     F   H+E   +    +Y   L      E+  +N  GYYD   D S 
Sbjct: 568 SYDEIRPLISILPEFAALHSEEHRMAAFDKYIRRLREKRELEKQYQNRRGYYDVGKDESY 627

Query: 383 L 385
           L
Sbjct: 628 L 628


>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +1

Query: 112 AHFGRRQGHPSQYCRSRGHQPGPNRRRICYQSRRDH 219
           +H+  +  H S+Y R+R   PG N      QS   H
Sbjct: 202 SHYNDKSFHRSRYSRARSRSPGSNISEYSDQSPPYH 237


>SPCC790.03 |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 248

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 397 GRSGWHVLLVRCSHPCRNSPQRIPGWFN 480
           G SGW    +  S  C +SPQR+  +FN
Sbjct: 125 GLSGWAFAFISAS--CVHSPQRLISFFN 150


>SPBC23G7.07c |||replication regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 277

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 12/49 (24%), Positives = 22/49 (44%)
 Frame = -2

Query: 160 DYDNTDLGAPAFFQNALVGIVSFGKSNANDIYPVVLTSISSFTEWILQN 14
           D  + +L       + +   +SF K    D YP  +  +  FT+ ++QN
Sbjct: 102 DLTDVELSDKVIKASYIEDTISFSKPKTVDNYPEYIQHLPGFTKKVVQN 150


>SPBC119.07 |ppk19||serine/threonine protein kinase
           Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -2

Query: 118 NALVGI-VSFGKSNANDIYPVVLTSISSFTEWILQ 17
           NAL  + V FGK+ +ND+    L +  + T+W+L+
Sbjct: 614 NALAPLCVFFGKAKSNDLILSHLITYLNDTDWMLR 648


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = +3

Query: 285 PSDTLPP*TVVPHPSRSTKIPWGITTPCWIIAPCWM 392
           PSD     T VP  + S   PW  TTP     P W+
Sbjct: 21  PSDAQSSPTFVPSANPSLTTPWLQTTPS-ANRPTWL 55


>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 49  W*VLRGRCHWHCS 87
           W V+ GRC W CS
Sbjct: 406 WEVMTGRCVWKCS 418


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,173,654
Number of Sequences: 5004
Number of extensions: 46231
Number of successful extensions: 148
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)