Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19o01r
(482 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0454 - 17895935-17896093,17896878-17896911,17897114-178972... 29 1.5
06_01_0580 + 4148969-4149101,4149394-4149546,4149682-4150095,415... 29 2.0
03_05_0908 + 28686855-28687328 28 3.4
01_06_0125 + 26711157-26713297,26715026-26715206 28 3.4
12_02_0701 + 22271550-22271652,22272310-22272791,22272823-22272927 28 4.5
08_02_1267 + 25728324-25728407,25728436-25728502,25728753-257288... 28 4.5
02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704 28 4.5
12_01_0954 - 9496370-9496643,9497181-9497239,9497574-9498179 27 6.0
01_05_0799 + 25334460-25334994,25335060-25335236,25335325-253354... 27 6.0
09_04_0477 - 17932797-17933974,17934454-17934612,17934693-17934957 27 7.9
04_04_0859 + 28805836-28805842,28806405-28806492,28807474-288075... 27 7.9
03_06_0412 + 33749039-33749077,33749585-33749728,33750110-337508... 27 7.9
>11_04_0454 -
17895935-17896093,17896878-17896911,17897114-17897252,
17897487-17897561,17897666-17897945
Length = 228
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 124 RRQGHPSQYCRSRGHQPGPNRR 189
RR+ H ++ R RG QP PNRR
Sbjct: 27 RRRRHHQRHRRRRGGQPAPNRR 48
>06_01_0580 +
4148969-4149101,4149394-4149546,4149682-4150095,
4150218-4150294,4151479-4152699,4153057-4153128
Length = 689
Score = 29.1 bits (62), Expect = 2.0
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 246 SLLVTMSSSLWRLPSDTLPP*TVVPHPSRSTKIPWGITTP 365
SL T+SS+L R+PS +LPP ++ +P I P
Sbjct: 394 SLTNTLSSTLQRVPSSSLPPQELLECKQAKVSMPPSIRIP 433
>03_05_0908 + 28686855-28687328
Length = 157
Score = 28.3 bits (60), Expect = 3.4
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 418 LLVRCSHPCRNSPQRIPGWF 477
LLV SH R SP+ + GWF
Sbjct: 21 LLVHSSHGARPSPRELQGWF 40
>01_06_0125 + 26711157-26713297,26715026-26715206
Length = 773
Score = 28.3 bits (60), Expect = 3.4
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +2
Query: 41 TDAGEYYGVDVIGIALSKRYDAY*RILEEGRGTQVSIVVVAATSPDQTGAE 193
++ GE GVD I ++ S D + +E GRG + ++ D G E
Sbjct: 109 SEEGEVRGVDFIDLSSSSSDDEEEKEVEAGRGAGSRVPIIKEAPDDAEGDE 159
>12_02_0701 + 22271550-22271652,22272310-22272791,22272823-22272927
Length = 229
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1
Query: 332 SARMGNYRSRRQCI*RQPPQARTHCDQQRKLQG 234
SAR R I +PP R HC+++R+++G
Sbjct: 86 SARNCRRRRHHPRIRLRPPPTRRHCEREREMRG 118
>08_02_1267 +
25728324-25728407,25728436-25728502,25728753-25728828,
25729388-25729450,25729640-25729896,25731299-25731440,
25731524-25732017,25732398-25732536,25733805-25733876,
25733960-25734040,25734677-25734843,25734942-25735147,
25735301-25735427,25735515-25735639
Length = 699
Score = 27.9 bits (59), Expect = 4.5
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +2
Query: 275 VEVAVRYTAALNGSSPSEQINKNTLGYYDTLLDNSTLLDVWAEVDGM 415
V++A ++ L + E I N L +D +LDN+TL+ ++ + M
Sbjct: 299 VDIATKFFVVLYFAEV-EAIQGNALRQFDIILDNNTLVSAFSPISMM 344
>02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704
Length = 748
Score = 27.9 bits (59), Expect = 4.5
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = -1
Query: 449 LRQGCEHRTSNTCHPLRPKHPAGCYYPTRCRNTPGYF 339
L GC+ N C R K+P C P C NTPG F
Sbjct: 293 LLDGCQD--INECEDSRFKYP--CSVPGTCINTPGGF 325
>12_01_0954 - 9496370-9496643,9497181-9497239,9497574-9498179
Length = 312
Score = 27.5 bits (58), Expect = 6.0
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +3
Query: 279 RLPSDTLPP*TVVPH-PSRSTKIPWGITTPCWIIAPCWMF 395
+LPS +LPP PH P ST + T+PC P F
Sbjct: 6 KLPSPSLPPSRSSPHVPPCSTLLHQAPTSPCQAPRPTSCF 45
>01_05_0799 + 25334460-25334994,25335060-25335236,25335325-25335447,
25335559-25335624,25335717-25336685,25336791-25336912,
25337156-25337549,25337888-25338009,25338253-25338646,
25338983-25339104,25339348-25339830,25340291-25340960,
25341713-25342224,25342484-25342540
Length = 1581
Score = 27.5 bits (58), Expect = 6.0
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +2
Query: 62 GVDVIGIALSKRYDAY*RILEEGRGTQVSIVVVAATSPDQTGAEFVISHDAIMTLV--LF 235
G D+ L + D Y +L G GT+ +IV PD+ ++ + D++ TL+ +F
Sbjct: 1378 GKDISDYGLPELTDTY-YLLRIGNGTKNTIVDDYVRLPDEIVIGYLDNEDSVNTLIEYVF 1436
Query: 236 PAV 244
P++
Sbjct: 1437 PSL 1439
>09_04_0477 - 17932797-17933974,17934454-17934612,17934693-17934957
Length = 533
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = -1
Query: 371 PTRCRNTPGYFC*SARMGNYRSRRQCI 291
P C NT G F S GNY CI
Sbjct: 102 PGICNNTMGSFTCSCHQGNYMENGTCI 128
>04_04_0859 + 28805836-28805842,28806405-28806492,28807474-28807558,
28807638-28807763,28807819-28807968,28808497-28808541,
28808612-28808875,28809843-28809887,28810395-28810430,
28812048-28812816,28813063-28813925,28814024-28814182,
28814440-28814558,28815356-28815417,28816677-28816805,
28817395-28817460,28817757-28817890,28818025-28818162,
28818630-28818889,28818996-28819107,28819590-28819675,
28820655-28820735,28822841-28822928,28823222-28823260,
28823847-28823964,28824063-28824130,28824884-28824981,
28825238-28825397,28825691-28825816,28825876-28825945,
28826046-28826449
Length = 1664
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 329 QINKNTLGYYDTLLDNSTLLDVWAEVDGMC 418
+IN+N LGY LL + LDV A ++ C
Sbjct: 1575 EINRNELGYTHLLLASRLPLDVGAYLERTC 1604
>03_06_0412 +
33749039-33749077,33749585-33749728,33750110-33750862,
33750959-33751778,33751893-33752140,33752285-33752391,
33753098-33753248,33753339-33753530,33753905-33754042
Length = 863
Score = 27.1 bits (57), Expect = 7.9
Identities = 10/32 (31%), Positives = 15/32 (46%)
Frame = +3
Query: 300 PP*TVVPHPSRSTKIPWGITTPCWIIAPCWMF 395
PP + P + K +G WI+ P W+F
Sbjct: 660 PPIVLSPKKVSTAKFLYGCAINSWILNPSWLF 691
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,080,429
Number of Sequences: 37544
Number of extensions: 345776
Number of successful extensions: 993
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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