Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19o01f
         (782 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    25   1.1  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   1.4  
S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor prot...    24   1.8  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   3.2  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   3.2  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   3.2  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   4.2  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   5.6  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   5.6  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -3

Query: 750 LRGRCHWALLFPKDTMPTSAFW--KKAGAPKSVL 655
           L+G  HW  L  KD    SAF   ++A +P S+L
Sbjct: 507 LKGHAHWLTLHFKDPKVESAFHNAEEAFSPLSLL 540


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 19/69 (27%), Positives = 32/69 (46%)
 Frame = -3

Query: 741 RCHWALLFPKDTMPTSAFWKKAGAPKSVLS*SRPPARTKPAQNLLSVTTRS*PLYCSLQF 562
           R  W +  P  T+PTS +   +G+P + L    P + TK    ++ ++    P  C +  
Sbjct: 355 RLRWMMEIPNVTLPTSTY---SGSP-TELPKHLPTSLTKSKMEVMELSDLHHP-NCKINR 409

Query: 561 SLLVTMSSS 535
            +  T SSS
Sbjct: 410 KVHHTTSSS 418


>S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor
           protein.
          Length = 85

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -2

Query: 412 WAEVDGMCYSYDAHILVVILLREFGMV-NSKVNIRYFTG 299
           W +  G C S   HI++V L  EFG++ + K++  ++ G
Sbjct: 46  WFKAIGTCGS---HIIIVGLFYEFGLITHVKLSSDWYMG 81


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -3

Query: 438 WIIAPCWMFGPKWMACVTRTMLTSL 364
           W+I PC  F   W  C+   ++ +L
Sbjct: 79  WVIHPCSSFRFYWDLCMLLLLVANL 103


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -3

Query: 438 WIIAPCWMFGPKWMACVTRTMLTSL 364
           W+I PC  F   W  C+   ++ +L
Sbjct: 79  WVIHPCSSFRFYWDLCMLLLLVANL 103


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -3

Query: 438 WIIAPCWMFGPKWMACVTRTMLTSL 364
           W+I PC  F   W  C+   ++ +L
Sbjct: 79  WVIHPCSSFRFYWDLCMLLLLVANL 103


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +1

Query: 385 SNTCHPLRPKHPAGCYYPTRCRNTPGYF 468
           S++C        +  Y  T CR  PGYF
Sbjct: 276 SHSCEACPAHSKSSDYGFTECRCDPGYF 303


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -1

Query: 677 QGHPSQYCRSRGHQP 633
           Q HPSQY   RG  P
Sbjct: 320 QHHPSQYHPHRGSSP 334


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -1

Query: 221 LKGSGSW*EQYQRTVGTIDSR 159
           +K SG W  +Y R +   D R
Sbjct: 288 VKNSGQWLREYDRELEDFDGR 308


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 239,425
Number of Sequences: 438
Number of extensions: 5835
Number of successful extensions: 16
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)