Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19n24f
         (748 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    59   4e-09
U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    51   1e-06
U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like pr...    39   0.003
Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical pr...    32   0.50 
AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like...    31   0.87 
Z92832-5|CAB07374.2|  292|Caenorhabditis elegans Hypothetical pr...    29   4.6  
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr...    28   6.1  

>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 58.8 bits (136), Expect = 4e-09
 Identities = 62/202 (30%), Positives = 86/202 (42%), Gaps = 9/202 (4%)
 Frame = +3

Query: 129 RIVSGWEATPGQHPHHAALRMVDPTGGVFACGGSIVHREWVITAAHCV-----AGRITVV 293
           R+V G+E  PG  P  AALR  +       CG SI+ +  +ITAAHC           VV
Sbjct: 26  RVVGGFETVPGAFPWTAALR--NKATKAHHCGASILDKTHLITAAHCFEEDERVSSYEVV 83

Query: 294 IRAGVTNLTT-PEYISESTEWYNYPTYDDTRPNLVQPNDISLLRLHRP-VVFTRYLQPIR 467
           +     N T   E I      + YP Y D     +  +DI++L +  P + F  Y QPI 
Sbjct: 84  VGDWDNNQTDGNEQIFYLQRIHFYPLYKD-----IFSHDIAILEIPYPGIEFNEYAQPIC 138

Query: 468 VQSSADAFRNYDGLTVYASGHGRLWTNGATPEVLNWVYLRAVANPTC--ALNFGTLITPN 641
           + S    F    G     SG G +    A  E L    +  +    C  +    + ++ +
Sbjct: 139 LPSK--DFVYTPGRQCVVSGWGSMGLRYA--ERLQAALIPIINRFDCVNSSQIYSSMSRS 194

Query: 642 AICARFFNVTSQSTCQGDSGGP 707
           A CA +      S CQGDSGGP
Sbjct: 195 AFCAGYLEGGIDS-CQGDSGGP 215


>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 53/212 (25%), Positives = 97/212 (45%), Gaps = 10/212 (4%)
 Frame = +3

Query: 108 DVDTTNLRIVSGWEATPGQHPHHAALRMVDPTGGVFACGGSIVHREWVITAAHCVA---G 278
           D  T + R++ G E++P   P    ++++   G    CGGS++   +V+TAAHC A    
Sbjct: 50  DYVTLDHRLIGGSESSPHSWPW--TVQLLSRLGH-HRCGGSLIDPNFVLTAAHCFAKDRR 106

Query: 279 RITVVIRAG--VTNLTTPEYISEST--EWYNYPTYDDTRPNLVQPNDISLLRLHRPVVFT 446
             +  +R G   +   +P  ++  +   WYN               D +++R+H PV  +
Sbjct: 107 PTSYSVRVGGHRSGSGSPHRVTAVSIHPWYNI--------GFPSSYDFAIMRIHPPVNTS 158

Query: 447 RYLQPIRVQSSADAFRNYDGLTVYASGHGRLWTNGATPEVLNWVYLRAVANPTCAL--NF 620
              +PI +  S  A  N   L V       +  +  +   L  +++  ++   C+   N+
Sbjct: 159 TTARPICL-PSLPAVEN--RLCVVTGWGSTIEGSSLSAPTLREIHVPLLSTLFCSSLPNY 215

Query: 621 -GTLITPNAICARFFNVTSQSTCQGDSGGPLV 713
            G +  P+ +CA  ++     +CQGDSGGPL+
Sbjct: 216 IGRIHLPSMLCAG-YSYGKIDSCQGDSGGPLM 246


>U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like
           protease protein 3 protein.
          Length = 313

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 52/211 (24%), Positives = 81/211 (38%), Gaps = 14/211 (6%)
 Frame = +3

Query: 123 NLRIVSGWEATPGQHPHHAALRMVDPTGGVFACGGSIVHREWVITAAHC---VAGRITVV 293
           + RI+ G     G +   A L      G    CG +++   W++TAAHC   +  R  V 
Sbjct: 35  SFRIIGGNSIDDGAN-WMAKLVSYGDNGQGILCGATVIDDFWLVTAAHCALQLQTRSFVY 93

Query: 294 IRAGVTNLTTPEYISESTEWYNYPTYDDTRPNLVQPNDISLLRLHRPVVFTRYLQPIRVQ 473
           +R    N      + E+   Y +  Y+    N    NDI+LLR+   +          V 
Sbjct: 94  VREPKNNRERSFSVKEA---YIHSGYN----NQTADNDIALLRISSDLSKLGIKPVCLVH 146

Query: 474 SSADAFRNYDGLTVYASGHGRLWTNGATPEVLNWVYLRAVANP-----TCALNFGTL--- 629
             +   + Y    V   G      +   P+++N   L++ + P      C   +  L   
Sbjct: 147 DDSKLLKQYKNGVVIGYGLTLGEDSSGEPKLINSQTLQSTSVPIISDDDCVKTWRFLSLL 206

Query: 630 ---ITPNAICARFFNVTSQSTCQGDSGGPLV 713
              IT   ICA  +      T  GDSGGPL+
Sbjct: 207 SVKITGYQICAGAY---LHGTAPGDSGGPLL 234


>Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical
           protein F15B9.5 protein.
          Length = 297

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = +3

Query: 132 IVSGWEATPGQHPHHAALRMVDPTGGVFACGGSIVHREWVITAAHCVAGRITVVIRAGVT 311
           I++G+ A        A++    P G    CGG ++    VIT+AHCV       + A VT
Sbjct: 17  IINGFSANSFDTLSLASVITRFPDGTTNVCGGVLIAPSIVITSAHCVFSGDDFAVTAKVT 76


>AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like
           protease protein 5 protein.
          Length = 331

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +3

Query: 516 YASGHGRLWTNGATPEVLNWVYLRAVANPTCALNFGTLITPNAICARFFNVTSQSTCQGD 695
           + S  G+ + N A P ++  + L      TC  N+GT I  ++ C        ++ C GD
Sbjct: 217 WGSDPGKGFDNAAFP-MIQVLTLATETLATCEENWGTSIPFDSFCTA--EEEDKNVCSGD 273

Query: 696 SGGPL 710
           SGG L
Sbjct: 274 SGGGL 278



 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +3

Query: 219 CGGSIVHREWVITAAHCVAGRITVVIRAGVTNLTTPEYISESTEWYN 359
           CGG+++  + V+TAAHC           G  N  +  Y  ES   YN
Sbjct: 62  CGGTLITLKHVLTAAHCFQKHFGAKKEGGEENSMSGRY-CESWVIYN 107


>Z92832-5|CAB07374.2|  292|Caenorhabditis elegans Hypothetical
           protein F31D4.6 protein.
          Length = 292

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
 Frame = +3

Query: 645 ICARFFNVTSQS---TCQGDSGGPLVHVD 722
           ICA   NV++ S   TC GDSGG L + D
Sbjct: 219 ICATSMNVSNYSAPRTCHGDSGGGLEYRD 247


>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
            ZK783.1 protein.
          Length = 2585

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = -3

Query: 665  IEESGAD--RIRRNQGAEVEGASRVGDSTQVYPVQDLGSSTIRPETTMTAGIHGES 504
            +E SG+D  +  +    E+EG S  GD       +D+  ST +P   +  G +GE+
Sbjct: 1178 LEISGSDLTKATKKPHVEIEG-SGTGDEEITATTRDVSKSTKKPRVEVDGGDNGET 1232


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,587,169
Number of Sequences: 27780
Number of extensions: 450122
Number of successful extensions: 1380
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1376
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)