Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19n23f
(766 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like p... 32 0.51
Z66498-2|CAA91291.2| 419|Caenorhabditis elegans Hypothetical pr... 31 0.68
Z19157-4|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical pr... 31 0.90
Z70681-1|CAA94580.1| 307|Caenorhabditis elegans Hypothetical pr... 31 1.2
AF106582-7|ABD94096.1| 806|Caenorhabditis elegans Hypothetical ... 31 1.2
AF106582-6|ABD94095.1| 834|Caenorhabditis elegans Hypothetical ... 31 1.2
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l... 30 1.6
U80837-5|AAB37901.1| 455|Caenorhabditis elegans Hypothetical pr... 30 2.1
U41538-3|AAP31431.1| 142|Caenorhabditis elegans Hypothetical pr... 29 2.7
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z93397-3|CAB07720.2| 376|Caenorhabditis elegans Hypothetical pr... 28 8.4
AF164625-1|AAD47816.1| 944|Caenorhabditis elegans tandem-array-... 28 8.4
AF022974-6|AAC48041.1| 944|Caenorhabditis elegans Tandem array ... 28 8.4
>U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like
protease protein 1 protein.
Length = 293
Score = 31.9 bits (69), Expect = 0.51
Identities = 43/202 (21%), Positives = 74/202 (36%), Gaps = 7/202 (3%)
Frame = +2
Query: 179 QCAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGSSRRSEPGEISYVHFAVNHPQFS--- 349
+C G ++ L+ A CF + +Y + G RS G V HP ++
Sbjct: 83 RCGGSLIDPNFVLTAAHCFAKDRRPTSYSVRVGG--HRSGSGSPHRVTAVSIHPWYNIGF 140
Query: 350 EENYDKDVSIVRVTHAIHFGPNXXXXXXXXXXXXXXXXXXXDLLGWGTTVQGGSASDGNL 529
+YD +I+R+ ++ + GWG+T++G S S L
Sbjct: 141 PSSYD--FAIMRIHPPVNTSTTARPICLPSLPAVENRLCV--VTGWGSTIEGSSLSAPTL 196
Query: 530 HKLELIVTNKENCRNQYKDHDRVVTDHKFCAGLVRDGGRDYDNTDLGAPAFFQN----AL 697
++ + + + C + R+ CAG G D D G P L
Sbjct: 197 REIHVPLLSTLFCSSLPNYIGRIHLPSMLCAG-YSYGKIDSCQGDSGGPLMCARDGHWEL 255
Query: 698 VGIVSFGKSNSNDAYPVVLTSI 763
G+VS+G + P V ++
Sbjct: 256 TGVVSWGIGCARPGMPGVYGNV 277
>Z66498-2|CAA91291.2| 419|Caenorhabditis elegans Hypothetical
protein M195.2 protein.
Length = 419
Score = 31.5 bits (68), Expect = 0.68
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 370 CEHRTSNTCHPLRPKYPAGCYYPTRCRNTPGYFC 471
C+ +N+C L P+ GC PT CRNT C
Sbjct: 275 CQTGCANSCAQLSPQPTEGC--PTNCRNTCNEVC 306
>Z19157-4|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical
protein ZC84.6 protein.
Length = 1474
Score = 31.1 bits (67), Expect = 0.90
Identities = 18/60 (30%), Positives = 25/60 (41%)
Frame = -3
Query: 743 GRRHWNCSFQKTQCLPTHFGRRQGHPSQYYRSHGHHPGPNRRRICDQSRRDHDPYTGSCS 564
G W C + C P G R PS R +H G ++ +R +DP +G CS
Sbjct: 311 GSTQWCCPTVASVCGPV--GGRPLDPSVNNRGTVYHSGVEKQGTATSTRFFYDPQSGKCS 368
>Z70681-1|CAA94580.1| 307|Caenorhabditis elegans Hypothetical
protein C30F2.1 protein.
Length = 307
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +1
Query: 394 CHPLRPKYPAGCYYPTRCRNTPG 462
C P+RPK P G P CR PG
Sbjct: 102 CEPIRPKCPPGPPGPPGCRGEPG 124
>AF106582-7|ABD94096.1| 806|Caenorhabditis elegans Hypothetical
protein W05F2.4b protein.
Length = 806
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 713 KTQCLPTHFGRRQGHPSQYYRSHGHHPGPNRRR 615
K + PT FGR Q H +Q + + + PNR R
Sbjct: 390 KRRSFPTSFGRPQAHQAQQHHAPSDYEKPNRFR 422
>AF106582-6|ABD94095.1| 834|Caenorhabditis elegans Hypothetical
protein W05F2.4a protein.
Length = 834
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 713 KTQCLPTHFGRRQGHPSQYYRSHGHHPGPNRRR 615
K + PT FGR Q H +Q + + + PNR R
Sbjct: 418 KRRSFPTSFGRPQAHQAQQHHAPSDYEKPNRFR 450
>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
lipoprotein receptorrelated protein 2 protein.
Length = 2192
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = +1
Query: 370 CEHRTS--NT-CHPLRPKYPAGCYYPTRCRNTPGY 465
CE + NT C P+ K P C+ RC +TPGY
Sbjct: 1863 CEQNAAAHNTDCSPICQKQPNWCHNGGRCLDTPGY 1897
>U80837-5|AAB37901.1| 455|Caenorhabditis elegans Hypothetical
protein F07E5.1 protein.
Length = 455
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = +3
Query: 147 YSYPS*INGSNSALVLFSPTTTTFQLL 227
YSYPS I +S +V+ + TTTTF LL
Sbjct: 75 YSYPSPIVLEHSFVVMTTTTTTTFSLL 101
>U41538-3|AAP31431.1| 142|Caenorhabditis elegans Hypothetical
protein R04E5.8b protein.
Length = 142
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -3
Query: 692 HFGRRQGHPSQYYRSHGHHPGPNRRRICDQSR-RDHD 585
H + H + + GHH GP R D++R R+HD
Sbjct: 57 HIAPARAHNRGQHHNRGHHHGPPRNHNQDRNRHRNHD 93
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical protein
R04E5.8a protein.
Length = 997
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -3
Query: 692 HFGRRQGHPSQYYRSHGHHPGPNRRRICDQSR-RDHD 585
H + H + + GHH GP R D++R R+HD
Sbjct: 901 HIAPARAHNRGQHHNRGHHHGPPRNHNQDRNRHRNHD 937
>Z93397-3|CAB07720.2| 376|Caenorhabditis elegans Hypothetical
protein ZC482.6 protein.
Length = 376
Score = 27.9 bits (59), Expect = 8.4
Identities = 19/71 (26%), Positives = 30/71 (42%)
Frame = +2
Query: 167 QWFQQCAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGSSRRSEPGEISYVHFAVNHPQF 346
++F+Q VLT + S A CF F YR + R P + + +V HP
Sbjct: 307 RFFEQAQSFVLTFQIFNSVAHCFICFFLSSQYRETVKTMIRIKTPPTVMVLESSV-HPTT 365
Query: 347 SEENYDKDVSI 379
E + ++ I
Sbjct: 366 RETSKTSNLVI 376
>AF164625-1|AAD47816.1| 944|Caenorhabditis elegans
tandem-array-modifier protein protein.
Length = 944
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -3
Query: 698 PTHFGRRQGHPSQYYRSHGHHPGPNRRRICDQSRRDH 588
P H +QG P Y HHP ++ DQ +R H
Sbjct: 463 PMHHQMQQGPPRMMYMHQQHHP---MHQVEDQMQRQH 496
>AF022974-6|AAC48041.1| 944|Caenorhabditis elegans Tandem array
expression modifierprotein 1 protein.
Length = 944
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -3
Query: 698 PTHFGRRQGHPSQYYRSHGHHPGPNRRRICDQSRRDH 588
P H +QG P Y HHP ++ DQ +R H
Sbjct: 463 PMHHQMQQGPPRMMYMHQQHHP---MHQVEDQMQRQH 496
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,404,475
Number of Sequences: 27780
Number of extensions: 460369
Number of successful extensions: 1205
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1205
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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